Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016437.1 Corchorus capsularis cultivar CVL-1 contig16458, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63004

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
358--388
2
15.5
2
100
0
62
48
0
0
51
1.00
3123--3180
24
2.5
24
78
13
59
31
3
1
63
1.21
27835--27903
23
3.0
24
89
10
110
44
4
15
34
1.67
27841--27909
21
3.2
21
91
8
104
44
4
15
34
1.67
31361--31457
47
2.1
47
100
0
194
44
14
0
41
1.45
35019--35043
2
12.5
2
100
0
50
52
0
0
48
1.00
36208--36341
26
4.7
26
72
27
96
19
14
26
39
1.90
36123--36342
58
3.9
56
80
10
243
20
15
26
38
1.91
39981--40024
7
6.0
7
92
7
70
18
0
27
54
1.44
39972--40024
15
3.5
15
87
10
81
20
0
26
52
1.46
39982--40024
22
2.0
22
100
0
86
18
0
27
53
1.45
46604--46634
11
2.8
11
95
0
53
9
16
9
64
1.48
55368--55392
6
4.2
6
100
0
50
48
36
0
16
1.46
55396--55581
38
4.9
38
93
3
286
22
36
19
22
1.95
55396--55581
77
2.4
76
90
6
288
22
36
19
22
1.95
58673--58704
11
2.9
11
90
0
55
37
0
18
43
1.51
60062--60099
6
6.3
6
100
0
76
34
0
15
50
1.45
62675--62712
6
6.3
6
100
0
76
34
0
15
50
1.45

Tables:   1

The End!