Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016439.1 Corchorus capsularis cultivar CVL-1 contig16460, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 928

Length: 1548
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.39


Found at i:620 original size:17 final size:17

Alignment explanation


    Indices: 600--633  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        590 GGGTAGTTAA

                             
        600 AAAAAAATCTTTTTCAT
          1 AAAAAAATCTTTTTCAT

                  * *        
        617 AAAAAAGTGTTTTTCAT
          1 AAAAAAATCTTTTTCAT

        634 GCAAGAGGAG


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41


Consensus pattern (17 bp):   
AAAAAAATCTTTTTCAT

Found at i:1513 original size:11 final size:11

Alignment explanation


    Indices: 1497--1528  Score: 55
    Period size: 11  Copynumber: 2.9  Consensus size: 11

       1487 GAAGTTCGTG

                       
       1497 TTTGAAGATTA
          1 TTTGAAGATTA

                     * 
       1508 TTTGAAGATAA
          1 TTTGAAGATTA

                      
       1519 TTTGAAGATT
          1 TTTGAAGATT

       1529 TGAAGACAAT


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  11   19  1.00

ACGTcount: A:0.38, C:0.00, G:0.19, T:0.44


Consensus pattern (11 bp):   
TTTGAAGATTA
Done.