Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016443.1 Corchorus capsularis cultivar CVL-1 contig16464, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2789
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32


Found at i:1851 original size:10 final size:9

Alignment explanation


    Indices: 1831--1865  Score: 52
    Period size: 10  Copynumber: 3.7  Consensus size: 9

       1821 CTGGTCGAAA

                     
       1831 ATTTTTTTT
          1 ATTTTTTTT

                      
       1840 ATTTTATTTT
          1 ATTTT-TTTT

                      
       1850 ATTTTTTTAT
          1 ATTTTTTT-T

                  
       1860 ATTTTT
          1 ATTTTT

       1866 CGATATAACT


Statistics
Matches: 24,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
   9    8  0.33
  10   16  0.67

ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83


Consensus pattern (9 bp):   
ATTTTTTTT
Done.