Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016446.1 Corchorus capsularis cultivar CVL-1 contig16467, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95062

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9090--9209
36
3.4
35
78
13
138
29
16
7
46
1.74
9248--9711
36
12.9
36
93
1
698
23
23
9
42
1.84
9705--9859
11
14.5
11
73
11
63
21
18
10
49
1.77
9763--9822
29
2.1
29
93
0
102
23
18
6
51
1.69
9745--9883
51
2.7
52
88
3
208
26
16
8
48
1.75
9735--9883
11
14.0
11
75
12
141
25
16
9
48
1.76
9952--10048
37
2.6
36
84
9
124
27
20
7
44
1.78
10051--10185
42
3.3
41
87
9
188
25
19
11
44
1.83
16189--16284
30
3.1
31
82
11
117
7
26
40
26
1.81
16488--16888
8
51.8
8
70
15
192
45
4
20
29
1.71
16487--16838
22
15.5
22
81
8
261
46
5
19
28
1.72
16641--16786
58
2.5
56
86
8
193
45
4
19
30
1.70
16770--16838
25
2.8
25
95
0
129
46
4
18
30
1.69
17902--17938
9
4.2
9
89
3
58
0
13
0
86
0.57
20014--20079
29
2.2
31
86
5
91
43
15
15
25
1.85
21338--21365
7
4.0
7
100
0
56
42
14
0
42
1.45
21733--21797
29
2.2
29
83
5
76
24
13
18
43
1.87
25500--25592
33
2.8
33
85
0
123
26
10
18
44
1.82
25620--25723
33
3.2
33
92
0
172
29
8
16
45
1.77
30552--30649
51
1.9
51
87
4
144
41
16
11
30
1.83
33271--33322
3
17.3
3
100
0
104
67
0
0
32
0.91
37120--37404
156
1.8
156
80
6
344
34
20
15
30
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37927--37966
15
2.7
15
100
0
80
52
10
0
37
1.35
39211--39250
19
2.2
19
90
4
64
32
20
2
45
1.64
39201--39260
30
2.0
30
83
6
77
35
18
3
43
1.67
43976--44010
17
2.1
17
88
0
52
45
2
0
51
1.16
44035--44072
2
19.0
2
89
10
60
47
2
0
50
1.15
53017--53071
27
2.1
26
86
3
74
23
5
9
61
1.46
59768--59801
12
2.7
13
90
4
52
20
11
8
58
1.59
59795--59853
28
2.3
24
82
11
64
18
6
15
59
1.58
63914--63943
11
2.7
11
94
0
51
40
0
20
40
1.52
67709--67740
16
2.0
16
93
0
55
21
6
18
53
1.67
67824--67862
21
1.9
19
85
10
51
25
10
20
43
1.83
69444--69473
11
2.7
11
94
0
51
40
0
20
40
1.52
73762--73791
2
15.5
2
93
6
53
53
0
0
46
1.00
74112--74182
35
2.0
36
91
2
117
47
22
15
14
1.81
77623--77730
33
3.3
33
85
5
155
43
19
9
27
1.81
77722--77808
33
2.6
33
83
7
97
36
21
11
29
1.89
81438--81472
12
2.9
12
100
0
70
17
25
31
25
1.97
81899--82088
94
2.0
94
95
1
346
45
10
12
32
1.74
83529--83594
33
2.0
33
90
0
105
42
18
10
28
1.83
83586--83672
33
2.6
33
83
7
97
36
21
11
29
1.89
86416--86454
20
2.0
20
94
0
69
33
30
5
30
1.79

Tables:   1

The End!