Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016447.1 Corchorus capsularis cultivar CVL-1 contig16468, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16891

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3751--3780
12
2.5
12
94
0
51
46
16
13
23
1.82
5032--5058
3
9.0
3
100
0
54
66
0
33
0
0.92
5621--5663
21
2.0
21
100
0
86
13
18
4
62
1.48
6150--6181
1
32.0
1
93
0
55
96
0
3
0
0.20
6864--6905
19
2.3
18
88
8
66
38
2
0
59
1.10
6870--6911
19
2.2
19
86
0
57
42
2
0
54
1.13
10761--10824
34
1.9
34
90
3
103
51
7
15
25
1.70
15450--15496
13
3.5
13
72
16
51
12
25
0
61
1.31
15447--15526
27
2.9
28
83
9
76
13
22
1
62
1.38
15569--15723
21
7.9
21
70
20
102
21
18
6
52
1.67
15641--15711
15
4.3
15
72
27
56
22
16
5
54
1.63
15671--15702
14
2.3
14
94
0
55
21
18
6
53
1.67
15577--15723
36
3.9
37
82
7
165
22
18
6
52
1.69
15746--15787
22
1.9
22
90
0
66
19
21
2
57
1.52
15755--15822
22
3.2
20
81
8
64
19
22
0
58
1.39
15675--15861
70
2.7
70
77
17
167
20
21
2
55
1.55
15784--15880
50
2.0
50
83
6
126
20
20
2
56
1.52
15812--15851
14
2.9
15
82
14
50
22
20
2
55
1.56
15867--16208
38
8.9
38
79
7
316
26
17
6
50
1.70
15948--16007
19
3.2
19
66
17
52
25
18
5
51
1.66
15909--16210
76
4.0
76
92
0
444
26
17
6
50
1.70

Tables:   1

The End!