Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016453.1 Corchorus capsularis cultivar CVL-1 contig16474, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11572
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30


Found at i:10717 original size:74 final size:74

Alignment explanation


    Indices: 10612--10764  Score: 288
    Period size: 74  Copynumber: 2.1  Consensus size: 74

      10602 GAAAATATAT

                *                                                    *       
      10612 CAATGTAAAGGCTTCTCACAACATAAGTACAAATCACCCTTGACAACATGGGTCCTAGACTACCA
          1 CAATCTAAAGGCTTCTCACAACATAAGTACAAATCACCCTTGACAACATGGGTCCTAAACTACCA

                     
      10677 ACAACTAAA
         66 ACAACTAAA

                                                                             
      10686 CAATCTAAAGGCTTCTCACAACATAAGTACAAATCACCCTTGACAACATGGGTCCTAAACTACCA
          1 CAATCTAAAGGCTTCTCACAACATAAGTACAAATCACCCTTGACAACATGGGTCCTAAACTACCA

                     
      10751 ACAACTAAA
         66 ACAACTAAA

                 
      10760 CAATC
          1 CAATC

      10765 CACCACAAAC


Statistics
Matches: 77,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  74   77  1.00

ACGTcount: A:0.41, C:0.28, G:0.10, T:0.20


Consensus pattern (74 bp):   
CAATCTAAAGGCTTCTCACAACATAAGTACAAATCACCCTTGACAACATGGGTCCTAAACTACCA
ACAACTAAA
Done.