genome.fa.s16459.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016459.1 Corchorus capsularis cultivar CVL-1 contig16480, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104978

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4870--4958	45	2.0	45	86	0	124	12	22	24	40	1.88
4876--4958	30	2.8	30	90	0	121	13	22	25	38	1.91
4876--4958	15	5.5	15	83	0	103	13	22	25	38	1.91
5585--5614	15	2.0	15	100	0	60	66	0	33	0	0.92
9233--9265	17	1.9	17	93	0	57	24	33	12	30	1.91
11011--11069	31	1.9	31	89	0	91	28	16	5	49	1.67
11110--11134	9	2.8	9	100	0	50	24	0	8	68	1.16
11525--12002	239	2.0	239	91	1	771	32	14	19	34	1.91
12168--12470	160	1.9	156	88	5	461	26	15	5	52	1.65
12803--12877	36	2.1	36	100	0	150	29	10	2	57	1.46
19579--19606	13	2.2	13	100	0	56	46	0	14	39	1.44
21531--21567	19	2.0	19	89	5	58	40	16	5	37	1.71
21781--21817	19	2.0	19	89	5	58	40	13	8	37	1.74
21994--22131	69	2.0	68	90	2	215	49	19	11	19	1.78
41151--41182	11	2.9	11	90	0	55	37	0	18	43	1.51
41151--41210	22	2.9	22	76	19	65	41	3	18	36	1.67
41161--41198	19	2.1	18	90	5	58	44	2	21	31	1.66
42516--42547	6	5.5	6	92	7	57	34	0	15	50	1.45
49280--49316	2	18.5	2	100	0	74	48	0	0	51	1.00
54451--54601	38	3.9	38	79	11	180	35	16	14	33	1.89
58736--58829	30	3.1	30	73	8	84	20	12	26	40	1.88
58784--58921	57	2.5	54	80	11	149	20	15	26	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58736--58921	60	3.3	56	77	13	179	19	13	26	39	1.89
71123--71216	30	3.1	30	76	11	102	21	13	27	37	1.91
71163--71300	57	2.5	54	81	11	158	19	15	27	37	1.92
71117--71300	60	3.3	56	78	14	184	19	13	27	39	1.89
74370--74397	7	4.0	7	100	0	56	42	0	0	57	0.99
86877--86911	14	2.5	14	95	0	61	82	11	2	2	0.88
87981--88127	69	2.1	70	86	5	201	20	23	19	37	1.94
87981--88136	35	4.5	35	80	4	174	19	22	20	37	1.94
88039--88149	35	3.2	33	81	11	114	18	18	22	39	1.92
88143--88318	35	5.3	35	77	13	199	28	12	21	37	1.90
88203--88238	17	2.2	16	95	5	63	33	13	11	41	1.80
88300--88332	16	2.1	16	94	0	57	30	12	9	48	1.71
88263--88369	51	2.1	51	92	0	178	28	13	17	40	1.87
88234--88402	86	2.0	85	89	1	257	28	11	21	39	1.88
88316--88624	35	9.0	35	87	4	425	29	12	20	38	1.89
89667--89908	80	2.9	81	87	4	324	43	4	16	35	1.69
90440--90584	41	3.5	41	96	0	254	22	20	11	46	1.82
90594--90670	40	1.9	40	97	0	145	28	10	9	51	1.66
90664--90783	30	3.6	31	67	25	84	28	23	8	40	1.83
90671--91107	71	6.2	71	90	4	573	26	22	8	42	1.82
90772--90892	39	3.3	39	68	25	118	27	19	8	44	1.79
90875--91066	31	5.6	31	69	27	131	25	23	7	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90903--91106	40	5.5	39	69	27	169	24	25	7	43	1.80
90671--91107	141	3.1	140	87	3	601	26	22	8	42	1.82
90671--91134	212	2.2	211	82	6	539	26	22	7	43	1.80
97765--97820	29	1.9	29	85	0	76	51	30	3	14	1.59
101927--101961	18	2.1	16	89	10	52	17	5	11	65	1.43

Tables:   1

The End!