Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016460.1 Corchorus capsularis cultivar CVL-1 contig16481, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127322

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3590--3694
40
2.6
40
87
3
138
53
2
20
23
1.59
3692--3732
16
2.6
16
88
7
57
56
4
24
14
1.58
3813--3894
21
3.9
21
80
7
103
53
7
17
21
1.67
3968--4015
13
3.6
13
73
15
53
62
0
25
12
1.30
3959--4014
27
2.0
28
89
3
87
60
0
23
16
1.35
18420--18838
155
2.7
153
77
10
420
32
16
19
31
1.94
19145--19196
17
3.1
17
85
0
77
26
32
17
23
1.96
26174--26240
26
2.6
26
97
0
125
19
14
37
28
1.91
27602--27641
21
1.9
21
89
0
62
60
10
17
12
1.59
37598--37637
21
2.0
21
85
5
55
27
22
5
45
1.73
38814--39033
110
2.0
110
100
0
440
36
20
11
31
1.88
44280--44321
17
2.5
17
80
7
50
16
9
16
57
1.65
46551--46615
29
2.2
31
81
13
82
24
7
18
49
1.74
50700--50755
21
2.7
20
76
15
51
37
7
10
44
1.67
51160--51341
41
4.5
40
82
6
179
35
17
14
32
1.90
51139--51341
82
2.5
81
81
8
225
36
16
13
33
1.88
56082--56121
13
3.1
13
85
0
53
45
15
15
25
1.84
56872--56923
3
17.7
3
96
4
97
67
0
0
32
0.91
66870--66907
8
4.8
8
100
0
76
39
0
26
34
1.57
77363--77419
27
2.1
27
96
0
105
33
14
12
40
1.83
79707--79734
3
9.3
3
100
0
56
0
32
0
67
0.91
87648--87679
3
10.7
3
100
0
64
65
0
34
0
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91864--91967
3
34.7
3
80
7
68
1
42
0
55
1.10
92031--92086
12
4.6
12
74
12
51
1
37
1
58
1.19
91941--92109
93
1.8
90
88
6
259
8
32
4
54
1.51
94296--94333
19
2.0
20
89
5
60
28
10
7
52
1.64
98338--98362
7
3.6
7
100
0
50
12
0
28
60
1.32
99454--99496
3
14.0
3
90
9
61
37
0
0
62
0.95
99454--99496
20
2.2
20
91
8
70
37
0
0
62
0.95
99454--99520
26
2.5
26
82
7
71
34
2
1
61
1.20
100612--100691
37
2.1
38
90
2
126
42
10
10
37
1.72
101398--101427
7
4.3
7
95
0
51
10
0
26
63
1.26
103104--103154
19
2.6
20
87
3
77
50
5
0
43
1.26
104475--104517
3
14.0
3
95
4
77
34
0
0
65
0.93
105242--105375
66
2.0
66
92
2
225
30
16
15
37
1.90
105308--105653
165
2.1
167
87
2
500
28
14
16
39
1.88
107855--107897
2
21.0
2
95
4
77
48
0
2
48
1.14
108494--108540
24
2.0
24
87
8
69
63
0
0
36
0.94
110119--110157
17
2.3
17
90
0
60
41
2
0
56
1.13
111564--111683
17
7.3
16
77
11
91
10
7
38
44
1.66
111595--111683
32
2.8
32
89
0
124
11
4
38
46
1.60
111827--111904
16
4.9
16
72
12
52
8
12
28
50
1.71
115423--115457
3
11.7
3
100
0
70
68
0
0
31
0.90
115461--115490
3
10.0
3
100
0
60
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120605--120737
31
4.6
30
69
19
102
34
26
21
18
1.96
120647--120694
22
2.3
20
86
10
62
39
25
16
18
1.91
120613--120716
53
2.0
53
86
0
145
37
25
18
18
1.93
121135--121159
11
2.3
11
100
0
50
84
0
0
16
0.63
126404--126450
15
3.1
15
87
9
51
2
27
6
63
1.30
126415--126450
3
12.0
3
88
11
56
0
30
2
66
1.06

Tables:   1

The End!