Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016464.1 Corchorus capsularis cultivar CVL-1 contig16485, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41503

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
630--696
33
2.0
33
97
0
125
49
8
7
34
1.62
4563--4637
18
3.9
18
74
16
69
36
0
18
45
1.50
4562--4641
41
2.0
41
94
0
142
36
0
20
43
1.52
4781--4822
6
6.8
6
97
2
75
50
0
14
35
1.43
7578--7629
25
2.1
25
92
0
86
44
0
34
21
1.52
9907--9937
16
1.9
16
93
0
53
0
35
0
64
0.94
11148--11201
10
5.6
10
77
16
51
1
16
0
81
0.78
11147--11201
14
4.2
14
79
13
55
1
18
0
80
0.81
11156--11201
15
3.1
15
87
0
56
2
13
0
84
0.71
11156--11198
19
2.1
21
87
8
63
2
11
0
86
0.67
29818--29879
30
2.1
30
90
0
97
41
17
20
19
1.90
30121--30155
8
4.4
8
89
10
54
37
0
0
62
0.95
35272--35318
1
47.0
1
100
0
94
0
0
0
100
0.00
38855--38949
35
2.8
35
92
4
160
11
11
29
47
1.75
39529--39601
30
2.4
30
90
0
110
19
8
13
58
1.60
40231--40264
1
34.0
1
100
0
68
0
0
0
100
0.00
41462--41498
2
18.5
2
100
0
74
48
0
0
51
1.00

Tables:   1

The End!