Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016465.1 Corchorus capsularis cultivar CVL-1 contig16486, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57373

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3354--3389
19
1.9
18
88
5
54
30
22
5
41
1.76
14615--14655
20
2.2
19
86
8
57
65
12
4
17
1.42
16007--16185
53
3.4
54
86
6
231
19
14
29
36
1.92
18211--18246
6
6.0
6
93
0
63
47
16
0
36
1.47
19192--19217
10
2.6
10
100
0
52
23
7
19
50
1.73
22894--22938
15
2.8
16
83
13
56
28
0
20
51
1.48
30488--30589
30
3.4
29
77
8
107
16
13
30
39
1.88
30544--30721
53
3.4
52
90
5
252
17
15
29
37
1.91
34353--34381
13
2.1
14
93
6
51
20
20
10
48
1.79
34587--34685
40
2.5
40
90
4
148
46
10
17
26
1.79
39456--39527
28
2.5
28
88
2
108
31
18
20
29
1.96
39493--39638
53
2.8
52
83
6
204
33
15
16
34
1.91
40472--40535
34
1.9
32
87
12
94
60
12
4
21
1.50
41795--41935
76
1.9
76
81
3
176
17
31
26
24
1.97
43961--44045
28
2.9
28
70
10
80
30
16
16
36
1.91
43933--44067
59
2.3
59
88
3
200
28
15
14
41
1.87
43931--44090
59
2.7
59
84
4
180
27
17
15
40
1.89
45616--45640
10
2.5
10
100
0
50
0
8
0
92
0.40
46224--46281
30
1.9
30
96
0
107
17
10
34
37
1.84
57343--57373
3
10.3
3
100
0
62
67
0
0
32
0.91

Tables:   1

The End!