Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016466.1 Corchorus capsularis cultivar CVL-1 contig16487, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78761

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2002--2049
22
2.1
23
84
3
62
64
8
4
22
1.38
6926--7413
244
2.0
244
96
0
904
19
25
13
41
1.89
13269--13293
2
12.5
2
100
0
50
52
0
0
48
1.00
14979--15011
2
16.5
2
100
0
66
48
0
0
51
1.00
30662--30805
31
4.7
31
80
0
164
19
21
25
34
1.97
30662--30805
62
2.3
62
85
1
182
19
21
25
34
1.97
32691--32757
3
22.7
3
93
3
118
65
0
1
32
1.02
33072--33119
3
16.0
3
100
0
96
33
0
0
66
0.92
40587--40631
20
2.2
20
84
4
54
66
6
11
15
1.42
44925--44981
30
1.9
29
85
3
78
17
19
17
45
1.86
45415--45460
24
2.0
23
82
4
56
28
26
15
30
1.96
47227--47413
87
2.1
87
82
9
222
30
6
22
40
1.80
47244--47434
87
2.2
87
82
5
217
29
7
24
37
1.84
52582--52635
27
2.0
27
96
0
99
14
20
14
50
1.78
52584--52633
15
3.5
15
73
15
61
12
22
16
50
1.77
54499--54574
29
2.6
29
87
4
109
19
26
13
40
1.88
54639--54701
30
2.1
30
85
8
85
39
7
26
25
1.83
59069--59114
23
2.0
23
95
0
83
13
32
21
32
1.92
66736--66796
28
2.2
28
82
5
70
54
11
14
19
1.71
68455--68488
16
2.1
17
88
5
52
44
0
2
52
1.16
70106--70143
16
2.4
16
90
0
58
47
39
10
2
1.52
70115--70148
16
2.1
16
94
0
59
41
38
14
5
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70786--70829
22
2.0
22
86
8
63
40
11
4
43
1.61
71136--71192
23
2.5
23
94
5
98
40
14
5
40
1.68
71136--71382
22
11.4
22
73
15
137
35
13
8
42
1.75
71089--71382
44
6.8
43
71
14
169
34
13
10
40
1.80
71244--71382
66
2.1
66
82
5
165
34
13
9
42
1.77
71326--71411
44
2.0
44
83
4
111
39
13
8
38
1.75
71488--71875
22
17.5
22
66
14
91
35
15
9
39
1.80
71693--71733
20
2.0
20
85
4
55
31
17
4
46
1.69
71913--72073
22
7.3
22
75
13
107
37
19
10
32
1.86
74729--74774
11
4.5
11
76
15
53
45
0
8
45
1.34
75834--75869
17
2.1
18
89
5
56
2
11
11
75
1.16
76460--76502
20
2.2
20
95
4
79
16
4
0
79
0.90
78602--78746
65
2.1
69
85
8
192
15
17
16
50
1.79

Tables:   1

The End!