Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016468.1 Corchorus capsularis cultivar CVL-1 contig16489, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59195

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6776--6907
66
2.0
66
98
0
255
26
7
20
45
1.78
6927--6959
2
17.0
2
93
6
59
48
0
0
51
1.00
15359--15383
13
1.9
13
100
0
50
12
0
0
88
0.53
15832--15883
26
2.0
26
84
0
68
30
25
7
36
1.84
22156--22324
85
2.0
85
100
0
338
40
9
7
42
1.65
26925--27017
32
2.9
31
75
10
98
13
36
36
12
1.84
33245--33313
16
4.2
17
72
7
54
15
5
37
40
1.72
33473--33562
32
2.8
32
94
0
153
10
12
28
48
1.73
33466--33569
16
6.5
16
70
0
82
8
12
30
48
1.71
33731--33963
117
2.0
112
79
7
245
40
9
12
37
1.75
35696--35784
45
2.0
45
91
8
146
25
21
17
34
1.96
35908--35951
21
2.1
21
82
0
52
38
9
2
50
1.47
36378--36460
31
2.7
31
86
3
105
55
20
6
18
1.63
42146--42223
21
3.4
21
75
24
86
39
14
11
34
1.82
42159--42233
21
3.0
27
71
28
92
40
14
13
32
1.85
56045--56092
21
2.2
22
78
10
55
52
2
16
29
1.56

Tables:   1

The End!