Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016469.1 Corchorus capsularis cultivar CVL-1 contig16490, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58226

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1610--1669
31
1.9
32
86
3
86
31
30
23
15
1.95
17274--17313
2
20.0
2
100
0
80
50
0
50
0
1.00
18333--18384
25
2.0
25
85
7
68
25
38
17
19
1.93
18986--19067
42
2.0
42
85
0
110
39
19
7
34
1.80
19308--19409
16
6.4
16
86
7
138
31
37
23
7
1.83
19319--19418
9
12.3
9
72
25
80
32
37
23
8
1.84
24424--24456
15
2.2
15
94
0
57
30
27
39
3
1.72
27231--27263
17
1.9
17
88
11
50
51
12
12
24
1.73
29601--29636
13
2.9
12
92
8
63
36
13
25
25
1.93
34253--34325
29
2.5
30
86
8
105
12
10
19
57
1.64
34752--34906
70
2.2
70
89
2
231
34
12
1
51
1.47
34951--35125
85
2.1
85
93
6
302
33
10
6
49
1.64
35806--35830
13
1.9
13
100
0
50
88
0
12
0
0.53
35891--35923
6
5.3
6
96
3
57
66
0
0
33
0.92
35891--35930
18
2.2
19
86
13
57
67
0
0
32
0.91
58187--58211
2
12.5
2
100
0
50
52
0
0
48
1.00

Tables:   1

The End!