Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016470.1 Corchorus capsularis cultivar CVL-1 contig16491, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11231

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
581--978
21
18.9
21
68
16
150
18
20
7
54
1.66
684--1000
43
7.5
42
71
15
172
17
20
6
55
1.64
683--753
23
3.2
23
81
16
96
21
19
4
54
1.60
771--1001
22
10.7
22
72
13
142
17
19
7
56
1.64
1232--1841
55
11.3
55
82
10
631
25
17
7
49
1.72
1245--1715
47
9.2
47
80
12
384
24
18
7
49
1.73
1232--1715
102
4.7
102
82
9
543
24
17
7
49
1.72
1535--1660
26
5.2
25
62
30
69
24
17
7
50
1.71
1643--1668
8
3.2
8
100
0
52
23
11
11
53
1.69
1644--1841
63
3.1
63
95
0
342
27
15
7
50
1.69
1596--1841
126
2.0
121
87
6
354
26
15
6
50
1.69
1597--1842
118
2.1
117
83
7
302
26
15
7
50
1.70
2609--2883
50
5.5
51
77
5
283
38
15
4
41
1.66
2627--2883
51
5.1
50
78
4
284
39
15
3
41
1.65
2587--2903
100
3.2
100
90
1
474
37
16
5
40
1.71
6562--6663
54
1.9
53
90
6
161
13
33
13
39
1.84

Tables:   1

The End!