Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016473.1 Corchorus capsularis cultivar CVL-1 contig16494, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23074

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9448--9596
60
2.5
60
97
1
282
35
11
7
45
1.68
10108--10277
88
1.9
87
90
1
268
38
10
22
28
1.88
10372--10500
65
2.0
64
80
11
147
16
3
16
63
1.45
10418--10454
19
1.9
19
94
0
65
8
2
18
70
1.25
10415--10482
19
3.6
19
79
15
63
13
2
16
67
1.34
10402--10524
65
1.9
62
80
11
142
14
3
15
66
1.37
12647--12682
19
1.9
18
88
5
54
36
22
0
41
1.54
18418--18466
22
2.2
22
85
0
62
8
4
22
65
1.37
19376--19414
20
2.0
20
94
0
69
41
17
10
30
1.83
19596--19623
14
2.0
14
100
0
56
50
14
14
21
1.78
21629--21680
17
3.2
17
75
10
63
13
1
36
48
1.54
21629--21702
32
2.3
32
83
0
94
13
5
36
44
1.67

Tables:   1

The End!