Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016474.1 Corchorus capsularis cultivar CVL-1 contig16495, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8490

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
235--338
40
2.5
42
84
6
142
51
5
20
22
1.68
422--475
26
2.1
26
89
6
83
51
3
16
27
1.61
479--565
37
2.4
37
79
11
97
59
3
19
17
1.51
580--722
56
2.5
56
85
3
162
55
4
18
21
1.59
655--766
22
5.2
22
79
9
117
53
5
19
21
1.65
607--803
100
2.0
100
88
4
299
54
4
18
22
1.62
763--803
22
1.9
22
90
5
66
53
2
19
24
1.57
873--936
27
2.2
29
83
13
96
60
0
23
15
1.34
1711--1767
28
2.0
28
86
0
78
54
21
10
14
1.69
3716--3996
21
13.5
21
69
15
115
19
20
7
51
1.71
3813--3847
16
2.2
16
94
0
61
20
17
8
54
1.68
3829--3964
22
6.0
22
81
13
143
22
21
4
52
1.64
3814--3953
45
3.0
46
82
11
137
19
20
5
54
1.64
4042--4089
21
2.2
21
88
3
69
22
18
4
54
1.61
4057--4100
21
2.1
21
87
4
63
15
20
2
61
1.45
4222--4287
31
2.1
31
91
8
107
25
18
6
50
1.70
4297--4429
47
2.5
53
72
20
136
23
17
9
49
1.76
4319--4478
47
3.4
47
93
0
268
23
21
9
46
1.80
5320--5599
99
2.8
99
81
8
284
34
16
6
42
1.73
5266--5620
50
7.1
50
81
4
306
34
15
6
43
1.72
7792--7917
55
2.3
54
90
2
198
29
8
15
46
1.75
8333--8439
27
3.9
27
85
2
133
38
24
20
16
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8334--8439
54
1.9
56
88
3
162
37
24
20
16
1.93

Tables:   1

The End!