Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016475.1 Corchorus capsularis cultivar CVL-1 contig16496, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7998

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
825--872
14
3.4
14
88
0
60
45
6
22
25
1.75
855--938
22
3.9
21
78
9
71
39
5
21
33
1.78
835--931
14
6.7
15
71
15
55
42
5
22
29
1.75
961--1010
16
3.1
16
85
0
64
42
0
28
30
1.56
1034--1294
22
11.8
22
70
16
148
43
6
23
26
1.78
1051--1221
89
1.9
89
83
7
222
43
5
23
26
1.76
1146--1388
36
6.6
36
72
14
176
42
5
23
28
1.76
1187--1284
50
1.9
52
85
6
137
41
6
23
28
1.78
1214--1373
22
7.2
22
71
14
91
41
6
23
28
1.78
1256--1400
58
2.5
58
88
3
202
40
4
24
30
1.76
1168--1329
89
1.8
89
89
1
254
43
6
22
28
1.77
1136--1388
14
17.9
14
66
21
95
43
5
23
28
1.76
1324--1400
14
5.4
13
72
25
50
40
3
24
31
1.73
1478--1552
24
3.1
24
74
1
69
45
2
24
28
1.67
1598--1654
8
7.1
8
83
0
78
49
1
22
26
1.60
1589--1654
24
2.8
24
90
0
105
48
3
21
27
1.64
1589--1713
8
14.8
9
70
18
58
45
4
20
29
1.69
2672--2727
8
6.8
8
78
8
58
12
12
0
75
1.06
2683--2727
17
2.6
17
96
0
81
13
8
0
77
0.98

Tables:   1

The End!