Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016476.1 Corchorus capsularis cultivar CVL-1 contig16497, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3670
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28


Found at i:2775 original size:4 final size:4

Alignment explanation


    Indices: 2766--2803  Score: 53
    Period size: 4  Copynumber: 9.8  Consensus size: 4

       2756 AGGAACAATA

                                                             
       2766 AAAT AAAT AAAT AAAT AAAT AAAT AAGA- AAAT -AAT AAA
          1 AAAT AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAAT AAA

       2804 ATTAACTAAC


Statistics
Matches: 31,  Mismatches: 0, Indels: 6
        0.84            0.00        0.16

Matches are distributed among these distances:
   3    4  0.13
   4   26  0.84
   5    1  0.03

ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21


Consensus pattern (4 bp):   
AAAT

Done.