genome.fa.s16477.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016477.1 Corchorus capsularis cultivar CVL-1 contig16498, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133300

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1720--1755	19	1.9	18	88	5	54	41	5	22	30	1.76
6294--6331	15	2.7	14	88	8	51	0	28	5	65	1.14
8854--8912	30	2.0	30	90	6	93	30	20	30	18	1.96
13021--13154	72	1.9	72	81	6	164	55	15	14	14	1.69
13605--13701	48	2.0	48	100	0	194	69	8	12	10	1.38
19742--19777	5	7.2	5	96	0	54	27	72	0	0	0.85
28091--28115	11	2.3	11	100	0	50	8	16	8	68	1.38
36976--37149	87	2.0	87	100	0	348	35	28	11	24	1.90
43247--43324	24	3.2	24	75	0	75	10	26	37	25	1.88
43572--43671	28	3.6	28	85	5	105	19	29	27	25	1.98
43601--43683	28	3.0	28	85	0	112	16	27	28	26	1.97
43754--43914	27	5.9	27	67	11	85	11	24	35	28	1.91
43822--43926	29	3.8	28	81	7	115	15	26	31	26	1.96
43847--44000	29	5.5	27	81	6	141	17	27	30	24	1.97
43834--44001	58	3.0	56	81	5	196	17	26	31	24	1.97
44032--44143	28	3.9	28	82	4	136	23	23	26	26	2.00
44730--45222	59	8.4	59	85	3	593	14	20	34	30	1.93
44767--45222	178	2.6	177	86	3	605	14	20	34	30	1.93
52069--52144	31	2.5	31	86	4	100	39	13	17	30	1.87
52137--52203	31	2.2	31	92	5	111	47	11	19	20	1.81
52321--52389	31	2.2	31	86	0	93	33	20	11	34	1.89
53314--53357	16	2.9	15	81	18	56	56	0	2	40	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53326--53358	15	2.1	16	88	5	50	51	0	0	48	1.00
53422--53512	31	3.0	30	84	6	112	40	9	14	35	1.79
53693--53759	2	38.0	2	72	24	62	47	0	0	52	1.00
53693--53759	7	9.5	8	73	25	62	47	0	0	52	1.00
54674--54796	64	1.9	64	89	0	192	31	8	17	42	1.80
58380--58446	31	2.2	31	89	5	102	22	19	10	47	1.79
61581--61672	46	2.0	45	80	2	103	30	17	23	28	1.97
61918--61973	23	2.4	23	78	0	67	21	30	30	17	1.96
80951--80978	7	4.0	7	100	0	56	85	0	0	14	0.59
81858--81898	4	10.8	4	89	10	68	24	0	0	75	0.80
81858--81895	15	2.5	15	95	0	67	23	0	0	76	0.79
81858--81898	19	2.2	19	95	0	73	24	0	0	75	0.80
82373--82427	22	2.5	22	82	5	58	36	7	14	41	1.74
82711--82740	13	2.3	13	94	0	51	66	0	13	20	1.24
90419--90453	4	8.8	4	100	0	70	51	0	22	25	1.48
91518--91636	33	3.5	33	82	8	134	23	42	26	7	1.81
99446--99493	20	2.5	19	80	16	62	33	8	6	52	1.57
101572--101685	55	2.0	58	93	5	198	55	16	3	24	1.57
101671--101718	21	2.3	21	79	17	55	47	20	12	18	1.81
107268--107549	135	2.1	134	83	2	341	19	26	25	28	1.99
108021--108050	2	15.0	2	92	0	51	53	0	46	0	1.00
118877--118902	10	2.6	10	100	0	52	38	23	7	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121157--121202	3	15.7	3	95	4	85	32	0	34	32	1.58

Tables:   1

The End!