Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016483.1 Corchorus capsularis cultivar CVL-1 contig16504, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4321

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
158--623
22
21.4
22
70
13
191
38
10
15
36
1.81
177--735
44
12.8
44
68
13
230
38
10
14
36
1.81
521--606
45
1.9
45
83
4
111
33
11
16
38
1.85
2047--2094
23
2.1
23
88
0
69
6
22
35
35
1.80
2067--2126
16
3.8
16
86
8
95
5
21
40
33
1.75
2064--2126
32
2.0
32
93
6
110
4
22
38
34
1.75
2070--2141
32
2.2
33
85
7
103
6
23
36
33
1.82
2970--3096
16
7.9
16
73
13
100
9
18
37
35
1.83
3362--3401
13
3.0
13
89
10
55
47
0
0
52
1.00
3396--3435
9
4.6
9
81
6
55
67
0
0
32
0.91
4296--4321
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!