Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016488.1 Corchorus capsularis cultivar CVL-1 contig16509, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38802

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
240--292
15
3.5
15
75
14
63
30
1
20
47
1.61
230--292
31
2.0
31
100
0
126
33
3
19
44
1.66
230--277
16
3.1
16
71
17
55
35
4
16
43
1.67
979--1057
31
2.5
31
81
0
95
37
26
18
16
1.92
1652--1734
42
2.0
43
90
7
134
25
16
22
34
1.95
1722--1764
20
2.1
21
86
4
61
39
20
18
20
1.93
2225--2261
18
2.1
18
89
0
56
35
8
32
24
1.85
7868--7940
27
2.7
27
84
2
92
38
28
15
17
1.90
9755--9789
16
2.2
16
100
0
70
45
17
25
11
1.81
12008--12153
67
2.2
68
94
1
258
50
15
19
13
1.77
12902--12936
16
2.2
16
100
0
70
45
17
25
11
1.81
14267--14298
2
16.0
2
100
0
64
50
0
50
0
1.00
15406--15477
36
2.0
36
100
0
144
27
13
19
38
1.90
20392--20635
123
2.0
122
79
7
262
52
2
10
34
1.50
24331--24363
2
17.5
2
87
12
52
51
0
0
48
1.00
25319--25393
37
2.0
37
100
0
150
36
13
10
40
1.79
25610--25650
21
2.0
21
95
0
73
21
21
7
48
1.74
30791--30826
18
2.0
18
94
0
63
25
0
19
55
1.43
37029--37080
20
2.7
19
80
11
54
50
3
0
46
1.20
37671--37709
18
2.2
18
90
9
62
43
2
17
35
1.63

Tables:   1

The End!