Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016489.1 Corchorus capsularis cultivar CVL-1 contig16510, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48535

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3661--3702
11
3.8
11
84
12
59
42
4
2
50
1.36
3661--3707
22
2.1
22
96
0
85
42
4
4
48
1.42
3894--3945
25
2.1
25
89
3
79
38
0
23
38
1.55
4015--4058
21
2.1
21
95
0
79
34
9
38
18
1.82
4160--4269
55
2.0
55
100
0
220
27
14
23
34
1.94
6849--6897
17
2.9
17
87
3
64
30
48
16
4
1.64
8050--8078
9
3.2
9
100
0
58
44
20
0
34
1.52
8281--9094
420
1.9
418
85
2
1121
26
14
17
41
1.88
9594--9638
21
2.3
21
85
11
60
60
11
4
24
1.49
9887--9966
40
2.0
41
82
7
101
16
23
27
32
1.96
10540--10587
24
2.0
23
84
4
60
2
18
6
72
1.15
11903--12281
50
7.7
49
82
5
390
31
16
29
23
1.96
19092--19133
22
1.9
22
90
0
66
33
7
26
33
1.83
25711--25745
15
2.2
16
95
5
63
91
5
2
0
0.50
25967--26036
32
2.1
33
92
7
115
51
8
8
31
1.63
26265--26346
31
2.7
30
83
5
110
43
9
15
30
1.79
26958--27195
123
1.9
124
85
6
329
34
10
2
52
1.48
27341--27404
31
2.1
31
96
0
119
31
17
10
40
1.84
27508--27584
29
2.6
27
75
15
73
37
12
20
28
1.90
28180--28263
40
2.1
40
84
4
107
21
28
27
22
1.99
31544--31587
14
3.4
12
84
9
52
31
0
11
56
1.35
42258--42786
265
2.0
261
88
4
778
36
15
13
34
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44619--44649
2
15.5
2
93
0
53
48
0
0
51
1.00

Tables:   1

The End!