Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016491.1 Corchorus capsularis cultivar CVL-1 contig16512, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46054

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19--58
2
20.0
2
100
0
80
50
0
0
50
1.00
6640--6729
45
2.0
45
91
0
144
26
22
17
33
1.96
7413--7484
35
2.1
35
91
0
117
48
16
1
33
1.55
7759--7841
26
3.3
26
83
16
122
37
4
7
50
1.51
7769--7825
22
2.6
22
97
0
105
38
3
8
49
1.51
7983--8065
26
3.4
25
80
16
102
38
4
7
49
1.52
8001--8049
22
2.2
22
96
0
89
40
4
6
48
1.47
11506--11541
18
2.0
18
88
0
54
41
0
22
36
1.54
12590--12620
13
2.4
13
94
0
53
19
9
9
61
1.54
12818--12953
66
2.1
66
95
0
245
27
16
8
47
1.75
15657--15702
20
2.2
21
84
3
58
41
10
15
32
1.82
22357--22862
199
2.6
199
91
2
806
35
13
17
32
1.90
23924--24978
201
5.3
198
82
5
1188
35
12
16
34
1.87
23924--24978
396
2.6
394
82
7
1231
35
12
16
34
1.87
25310--25340
16
1.9
16
93
0
53
54
0
9
35
1.33
26157--26207
25
2.0
25
85
11
68
52
1
7
37
1.42
33915--33940
1
26.0
1
100
0
52
0
0
0
100
0.00
35257--35290
15
2.3
15
89
0
50
32
26
35
5
1.81
41620--41649
15
2.0
15
93
0
51
10
6
56
26
1.57
41585--41739
51
2.9
54
86
5
226
17
13
50
18
1.77
42783--42814
16
2.0
16
100
0
64
37
12
12
37
1.81
43820--43934
58
2.0
58
91
0
185
42
14
8
33
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45058--45351
159
1.9
155
91
2
480
48
8
10
32
1.66
45453--45491
2
19.5
2
100
0
78
51
0
0
48
1.00

Tables:   1

The End!