Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016494.1 Corchorus capsularis cultivar CVL-1 contig16515, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58584

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--28
2
13.5
2
100
0
54
51
0
0
48
1.00
13851--14215
107
3.5
106
89
5
555
40
8
10
41
1.69
15597--15638
2
22.5
2
86
13
63
45
0
0
54
0.99
16235--16263
15
1.9
15
100
0
58
55
0
6
37
1.27
16202--16272
29
2.5
28
80
11
65
53
0
7
39
1.28
16230--16264
15
2.5
13
83
16
52
57
0
5
37
1.23
17162--17196
2
17.5
2
87
0
52
48
0
5
45
1.26
17724--17782
25
2.4
25
88
0
91
20
30
32
16
1.95
19459--19638
71
2.5
71
84
1
209
27
18
26
27
1.98
20428--20503
31
2.5
31
93
2
127
14
15
36
32
1.88
23681--23709
14
2.1
14
100
0
58
13
6
34
44
1.71
24471--24510
19
2.1
19
100
0
80
45
10
10
35
1.71
28504--28649
54
2.7
54
84
0
193
20
27
26
26
1.99
35086--36262
589
2.0
590
96
0
2171
24
24
19
31
1.98
37208--37245
15
2.5
15
91
0
58
15
34
31
18
1.92
52132--52205
3
25.3
3
91
5
125
66
0
1
32
1.00

Tables:   1

The End!