genome.fa.s16495.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016495.1 Corchorus capsularis cultivar CVL-1 contig16516, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112321

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3072--3113	13	3.3	13	83	6	50	35	0	9	54	1.33
11409--11517	31	3.5	31	91	0	182	27	26	18	27	1.98
15991--16042	27	1.9	27	84	7	70	19	17	9	53	1.70
16600--16638	9	4.3	9	83	0	51	53	0	2	43	1.14
19771--19795	12	2.1	12	100	0	50	16	36	32	16	1.90
35618--35642	13	1.9	13	100	0	50	40	28	0	32	1.57
39439--39506	26	2.6	26	95	0	118	38	16	17	27	1.91
39444--39530	39	2.3	37	86	4	111	39	16	17	27	1.90
39444--39530	13	6.8	13	78	5	97	39	16	17	27	1.90
42238--42286	21	2.3	21	92	0	80	20	18	18	42	1.89
60548--60578	16	1.9	16	93	0	53	38	16	3	41	1.64
60929--61141	22	9.8	22	68	12	84	40	7	15	36	1.76
61218--61309	44	2.1	44	83	0	112	31	16	15	36	1.90
61231--61394	22	7.4	22	72	10	100	37	12	15	34	1.86
61284--61343	24	2.6	24	81	5	79	36	8	21	33	1.84
61723--61872	77	2.0	74	92	5	248	35	8	18	38	1.80
62180--62219	20	2.0	21	90	5	64	0	10	7	82	0.84
63128--63179	19	2.8	19	91	8	81	32	5	5	55	1.47
63192--63239	20	2.3	20	82	3	60	18	2	14	64	1.38
63346--63370	1	25.0	1	100	0	50	100	0	0	0	0.00
63618--63705	43	2.1	43	95	2	160	6	28	3	61	1.38
68632--68696	21	3.1	21	86	4	87	52	16	6	24	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68645--68699	21	2.6	21	94	0	92	54	20	5	20	1.63
72661--72720	30	2.0	30	96	0	111	16	28	20	35	1.94
80296--80343	17	2.8	17	90	6	71	52	2	33	12	1.51
81926--81966	19	2.2	19	86	0	55	26	2	58	12	1.46
84426--84523	35	2.8	35	88	0	151	24	22	16	36	1.94
85213--85379	54	3.0	54	90	4	253	23	15	4	55	1.59
85627--85783	85	1.8	85	97	0	296	36	12	0	49	1.46
88087--88178	48	1.9	47	88	2	139	50	3	18	28	1.63
89163--89216	20	2.7	20	100	0	108	42	20	11	25	1.85
89356--89458	54	1.9	54	97	0	197	37	13	19	29	1.90
89543--89606	33	1.9	33	93	0	110	28	20	20	31	1.97
89641--89714	32	2.2	33	88	4	105	48	4	28	18	1.66
89881--89932	17	3.1	17	88	5	70	53	3	28	13	1.57
91064--91123	31	1.9	31	100	0	120	5	40	0	55	1.22
91052--91126	31	2.6	27	81	18	98	4	41	1	53	1.28
94042--94085	14	3.2	14	87	6	63	31	0	4	63	1.14
96337--96366	2	15.0	2	100	0	60	50	0	0	50	1.00
96896--96951	21	2.6	21	80	2	67	41	8	19	30	1.82
97053--97288	22	10.8	22	75	5	201	35	10	15	38	1.81
97053--97287	66	3.6	64	79	10	228	35	10	15	39	1.81
97046--97309	22	12.1	21	73	7	138	36	9	15	37	1.81
100344--100431	22	3.9	23	70	8	65	38	6	10	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100814--100843	15	2.0	15	93	0	51	36	6	26	30	1.82
102427--102490	16	4.1	15	74	9	56	32	34	21	10	1.89
103336--103452	7	14.9	8	73	21	88	34	38	21	5	1.78
103336--103445	16	6.9	16	90	2	150	33	38	21	6	1.79
103438--103493	16	3.6	16	70	4	51	42	30	17	8	1.80
111748--111853	55	1.9	55	90	0	167	43	18	15	22	1.87
111748--111840	27	3.4	27	64	24	68	45	18	16	20	1.86

Tables:   1

The End!