Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01016496.1 Corchorus capsularis cultivar CVL-1 contig16517, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18492
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Found at i:1539 original size:19 final size:20
Alignment explanation
Indices: 1494--1540 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
1484 GTGGCACGCT
*
1494 ACATGTACCAAAAAGTCGTGCC
1 ACATGTACCAAAAA--CGTGAC
1516 ACATGTACCAAAAA-GTGAC
1 ACATGTACCAAAAACGTGAC
1535 ACATGT
1 ACATGT
1541 TACGCCATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 10 0.42
22 14 0.58
ACGTcount: A:0.40, C:0.23, G:0.17, T:0.19
Consensus pattern (20 bp):
ACATGTACCAAAAACGTGAC
Found at i:3009 original size:2 final size:2
Alignment explanation
Indices: 2868--2992 Score: 67
Period size: 2 Copynumber: 68.5 Consensus size: 2
2858 TAGATATTTT
* *
2868 TA TA TA -A TA TA TA TT TA -A AA TA TA T- TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
2906 T- TA TA TA TA TT TT TA T- TA TA TA TA AA TA TA TA TA AA T- TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
2945 TA -A AA TA TA T- TA TA TA TA T- TA TA AA TA TA TT TA -A AA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2983 TA T- TA TA TA T
1 TA TA TA TA TA T
2993 GCTTTTTATT
Statistics
Matches: 95, Mismatches: 16, Indels: 24
0.70 0.12 0.18
Matches are distributed among these distances:
1 12 0.13
2 83 0.87
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:3013 original size:31 final size:31
Alignment explanation
Indices: 2870--2992 Score: 115
Period size: 31 Copynumber: 3.9 Consensus size: 31
2860 GATATTTTTA
*
2870 TATAATATATATTTAAAATATATTATATATAT
1 TATAA-ATATATATAAAATATATTATATATAT
* ** * *
2902 TAT-ATTATATAT-ATTTTTATTATATATAAA
1 TATAAATATATATAAAATATATTATATAT-AT
* * *
2932 TATATATAAATTTTAAAATATATTATATATAT
1 TATAAATATA-TATAAAATATATTATATATAT
*
2964 TATAAATATATTTAAAATATATTATATAT
1 TATAAATATATATAAAATATATTATATAT
2993 GCTTTTTATT
Statistics
Matches: 71, Mismatches: 16, Indels: 9
0.74 0.17 0.09
Matches are distributed among these distances:
29 12 0.17
30 10 0.14
31 23 0.32
32 14 0.20
33 12 0.17
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (31 bp):
TATAAATATATATAAAATATATTATATATAT
Found at i:3322 original size:32 final size:32
Alignment explanation
Indices: 3263--3323 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
3253 AGTTTTGTAA
* *
3263 AACTTTTGAAACGCCTGTTGTACCCTTATTTT
1 AACTTTTGAAACGCCTATTATACCCTTATTTT
* *
3295 AACTTTTGAAATGCCTATTATATCCTTAT
1 AACTTTTGAAACGCCTATTATACCCTTAT
3324 GTCTAACATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.26, C:0.20, G:0.10, T:0.44
Consensus pattern (32 bp):
AACTTTTGAAACGCCTATTATACCCTTATTTT
Found at i:4094 original size:22 final size:21
Alignment explanation
Indices: 4069--4143 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 21
4059 AGTTTATAAG
*
4069 AATTTCATAGTGTGGTTAACAA
1 AATTTCATAG-GAGGTTAACAA
4091 AATTTCATTAGGAGGTT-ACTAA
1 AATTTCA-TAGGAGGTTAAC-AA
* * *
4113 TATTTCATGGGGAGGTTATCAA
1 AATTTCAT-AGGAGGTTAACAA
4135 AATTTCATA
1 AATTTCATA
4144 TGAATGTTAT
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
21 3 0.07
22 36 0.84
23 4 0.09
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (21 bp):
AATTTCATAGGAGGTTAACAA
Found at i:4229 original size:22 final size:23
Alignment explanation
Indices: 4192--4384 Score: 122
Period size: 22 Copynumber: 8.7 Consensus size: 23
4182 AAATTTGATA
*
4192 GATTATC-AAATCTCATAGAG-T
1 GATTATCAAAATTTCATAGAGAT
*
4213 GATTATCGAAATTTCATAGAGAT
1 GATTATCAAAATTTCATAGAGAT
*
4236 CGAATTATCAAAATTT-ATAG-GAA
1 -G-ATTATCAAAATTTCATAGAGAT
* *
4259 GATTATCAAAATTTCATAGTGTT
1 GATTATCAAAATTTCATAGAGAT
4282 G-TTATCAAAATTTC-TA-ATCGA-
1 GATTATCAAAATTTCATAGA--GAT
* *
4303 GGTTATCAAAATTACATA-ATG-T
1 GATTATCAAAATTTCATAGA-GAT
* *
4325 GATTATCAGAATTTCATAGAG-G
1 GATTATCAAAATTTCATAGAGAT
* * * *
4347 GATCAACAAAATTTTATAAAGA-
1 GATTATCAAAATTTCATAGAGAT
* *
4369 GGTTATCAAATTTTCA
1 GATTATCAAAATTTCA
4385 AAATGTGATT
Statistics
Matches: 136, Mismatches: 23, Indels: 25
0.74 0.12 0.14
Matches are distributed among these distances:
21 23 0.17
22 87 0.64
23 9 0.07
24 5 0.04
25 12 0.09
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.35
Consensus pattern (23 bp):
GATTATCAAAATTTCATAGAGAT
Found at i:4558 original size:22 final size:21
Alignment explanation
Indices: 4490--4743 Score: 133
Period size: 22 Copynumber: 11.6 Consensus size: 21
4480 TCATGGAGTA
*
4490 ATCAAAATTTCAGGAAGA-A-T
1 ATCAAAATTTCA-TAAGAGATT
* *
4510 ATCAAAATTTCAT-AGTTTGGTT
1 ATCAAAATTTCATAAG--AGATT
* *
4532 TTCAAATTTTCATAAGATGATT
1 ATCAAAATTTCATAAGA-GATT
4554 ATCAAAATTTCATAGTATGTAGA-T
1 ATCAAAATTTCATA--A-G-AGATT
4578 -T-AAAATTTCATAGAGAGATT
1 ATCAAAATTTCATA-AGAGATT
* *
4598 AACAAAATTTCATAATGAGGTT
1 ATCAAAATTTCATAA-GAGATT
** * *
4620 ATCAAAAAATCATAGGAAGGTT
1 ATCAAAATTTCATAAG-AGATT
* *
4642 ATCAAAATTTTATAGAGAGGTTT
1 ATCAAAATTTCATA-AGA-GATT
* *
4665 ATCAAAATTTTATAGGAAGATTT
1 ATCAAAATTTCATAAG-AGA-TT
* *
4688 ATCAAAATTTTATAACGAGGTT
1 ATCAAAATTTCATAA-GAGATT
* * *
4710 ATCACAATTTCATAGTGTGATT
1 ATCAAAATTTCATA-AGAGATT
4732 ATCAAAATTTCA
1 ATCAAAATTTCA
4744 GAGTGTGATT
Statistics
Matches: 182, Mismatches: 31, Indels: 40
0.72 0.12 0.16
Matches are distributed among these distances:
18 2 0.01
19 3 0.02
20 14 0.08
21 3 0.02
22 113 0.62
23 40 0.22
24 3 0.02
25 3 0.02
26 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.13, T:0.36
Consensus pattern (21 bp):
ATCAAAATTTCATAAGAGATT
Found at i:4609 original size:66 final size:66
Alignment explanation
Indices: 4534--4743 Score: 158
Period size: 66 Copynumber: 3.2 Consensus size: 66
4524 GTTTGGTTTT
* * * *
4534 CAAATTTTCATAAGATGATTATCAAAATTTCATA-GTATGTAGATTAAAATTTCATAGAGA-GAT
1 CAAAATTTCATAAGA-GATTATCAAAATTTCATAGGAAGGT-GATCAAAATTTCATAGAGAGGAT
4597 TAA
64 TAA
* ** * * *
4600 CAAAATTTCATAATGAGGTTATCAAAAAATCATAGGAAGGTTATCAAAATTTTATAGAGAGGTTT
1 CAAAATTTCATAA-GAGATTATCAAAATTTCATAGGAAGGTGATCAAAATTTCATAGAGAGGATT
*
4665 AT
65 AA
* * * * * * * *
4667 CAAAATTTTATAGGAAGATTTATCAAAATTTTATAACG-AGGTTATCACAATTTCATAGTG-TGA
1 CAAAATTTCATAAG-AGA-TTATCAAAATTTCAT-AGGAAGGTGATCAAAATTTCATAGAGAGGA
*
4730 TTAT
63 TTAA
4734 CAAAATTTCA
1 CAAAATTTCA
4744 GAGTGTGATT
Statistics
Matches: 114, Mismatches: 24, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
66 44 0.39
67 37 0.32
68 31 0.27
69 2 0.02
ACGTcount: A:0.42, C:0.09, G:0.13, T:0.36
Consensus pattern (66 bp):
CAAAATTTCATAAGAGATTATCAAAATTTCATAGGAAGGTGATCAAAATTTCATAGAGAGGATTA
A
Found at i:4680 original size:45 final size:44
Alignment explanation
Indices: 4490--4741 Score: 185
Period size: 44 Copynumber: 5.7 Consensus size: 44
4480 TCATGGAGTA
* * ****
4490 ATCAAAATTTC--AGGAAGAATATCAAAATTTCATAGTTTGGTT
1 ATCAAAATTTCATAGGAAGATTATCAAAATTTTATAACGAGGTT
* * * * * * *
4532 TTCAAATTTTCATAAGATGATTATCAAAATTTCAT-A-GTATGTAG
1 ATCAAAATTTCATAGGAAGATTATCAAAATTTTATAACG-AGGT-T
* * * *
4576 ATTAAAATTTCATA-GAGAGATTAACAAAATTTCATAATGAGGTT
1 ATCAAAATTTCATAGGA-AGATTATCAAAATTTTATAACGAGGTT
** *
4620 ATCAAAAAATCATAGGAAGGTTATCAAAATTTTATAGA-GAGGTTT
1 ATCAAAATTTCATAGGAAGATTATCAAAATTTTATA-ACGAGG-TT
*
4665 ATCAAAATTTTATAGGAAGATTTATCAAAATTTTATAACGAGGTT
1 ATCAAAATTTCATAGGAAGA-TTATCAAAATTTTATAACGAGGTT
* *
4710 ATCACAATTTCATAGTG-TGATTATCAAAATTT
1 ATCAAAATTTCATAG-GAAGATTATCAAAATTT
4742 CAGAGTGTGA
Statistics
Matches: 167, Mismatches: 30, Indels: 24
0.76 0.14 0.11
Matches are distributed among these distances:
42 9 0.05
43 4 0.02
44 89 0.53
45 43 0.26
46 22 0.13
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.37
Consensus pattern (44 bp):
ATCAAAATTTCATAGGAAGATTATCAAAATTTTATAACGAGGTT
Found at i:4723 original size:90 final size:89
Alignment explanation
Indices: 4579--4741 Score: 204
Period size: 90 Copynumber: 1.8 Consensus size: 89
4569 TATGTAGATT
* *
4579 AAAATTTCATAGAGAGATTAACAAAATTTCATAATGAGGTTATCAAAAAATCATAG-GAAGGTTA
1 AAAATTTCATAGAGAGATTAACAAAATTTCATAACGAGGTTATCAAAAAATCATAGTG-AGATTA
4643 TCAAAATTTTATAGAGAGGTTTATC
65 TCAAAATTTTATAGAGAGGTTTATC
* * * * ** *
4668 AAAATTTTATAG-GAAGATTTATCAAAATTTTATAACGAGGTTATCACAATTTCATAGTGTGATT
1 AAAATTTCATAGAG-AGA-TTAACAAAATTTCATAACGAGGTTATCAAAAAATCATAGTGAGATT
4732 ATCAAAATTT
64 ATCAAAATTT
4742 CAGAGTGTGA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
88 1 0.02
89 14 0.23
90 46 0.74
91 1 0.02
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (89 bp):
AAAATTTCATAGAGAGATTAACAAAATTTCATAACGAGGTTATCAAAAAATCATAGTGAGATTAT
CAAAATTTTATAGAGAGGTTTATC
Found at i:4748 original size:22 final size:22
Alignment explanation
Indices: 4708--4754 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
4698 TATAACGAGG
* *
4708 TTATCACAATTTCATAGTGTGA
1 TTATCAAAATTTCAGAGTGTGA
4730 TTATCAAAATTTCAGAGTGTGA
1 TTATCAAAATTTCAGAGTGTGA
4752 TTA
1 TTA
4755 CTAACAATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (22 bp):
TTATCAAAATTTCAGAGTGTGA
Found at i:4765 original size:22 final size:23
Alignment explanation
Indices: 4708--4763 Score: 73
Period size: 22 Copynumber: 2.5 Consensus size: 23
4698 TATAACGAGG
*
4708 TTATC-ACAATTTCATAGTGTGA
1 TTATCAACAATTTCAGAGTGTGA
4730 TTATCAA-AATTTCAGAGTGTGA
1 TTATCAACAATTTCAGAGTGTGA
4752 TTA-CTAACAATT
1 TTATC-AACAATT
4764 CATATGGAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 1 0.03
22 24 0.80
23 5 0.17
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (23 bp):
TTATCAACAATTTCAGAGTGTGA
Found at i:4906 original size:22 final size:22
Alignment explanation
Indices: 4844--4907 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
4834 GTGTTGGTTA
* * *
4844 TCAAAATTTCATTGGGAAGT-T
1 TCAAAATTCCATAGGGAGGTCT
**
4865 ATCAAAATTCCATATTGAGGTCT
1 -TCAAAATTCCATAGGGAGGTCT
*
4888 TCAAAATTCCTTAGGGAGGT
1 TCAAAATTCCATAGGGAGGT
4908 TAACAAAATT
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
22 32 0.97
23 1 0.03
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (22 bp):
TCAAAATTCCATAGGGAGGTCT
Found at i:7044 original size:15 final size:15
Alignment explanation
Indices: 7020--7072 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
7010 ACCTTCGGCA
*
7020 TCATCGTCATCCTTG
1 TCATCGTCATCCTCG
* *
7035 TCATCATCATCGTCG
1 TCATCGTCATCCTCG
*
7050 TCGTCGTCATCCTCG
1 TCATCGTCATCCTCG
7065 TCATCGTC
1 TCATCGTC
7073 TTCGACTGTA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.13, C:0.36, G:0.15, T:0.36
Consensus pattern (15 bp):
TCATCGTCATCCTCG
Found at i:7058 original size:21 final size:21
Alignment explanation
Indices: 7018--7060 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7008 TCACCTTCGG
*
7018 CATCATCGTCATCCTTGTCAT
1 CATCATCGTCATCCTCGTCAT
* *
7039 CATCATCGTCGTCGTCGTCAT
1 CATCATCGTCATCCTCGTCAT
7060 C
1 C
7061 CTCGTCATCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.16, C:0.35, G:0.14, T:0.35
Consensus pattern (21 bp):
CATCATCGTCATCCTCGTCAT
Found at i:9671 original size:126 final size:126
Alignment explanation
Indices: 9480--9724 Score: 346
Period size: 126 Copynumber: 1.9 Consensus size: 126
9470 CACTCTCATG
* * * **
9480 GTTTCCACTAGCATGCCAAGCTCCCTCATTGCTACCAAAACTGCCACCACTTTCATAATTTTTGC
1 GTTTCCACTAGCATGCCAACCTCCCTCATTGCTACCAAAACTACCACCAATTTCATAATCATTGC
* ** * *
9545 TATCACTGCACCCACTGCTACGACCACCCCCACATCCATTGCGTCCACGTCCACCCCTATT
66 TACCACCCCAACCACTGCTACGACCACCCCCACATCCATTACGTCCACGTCCACCCCTATT
* * **
9606 GTTTCCACTAGCATGCCAACCTCCCTCATTGCTACCCAAGCTACCACCAATTTCATCCTCATTGC
1 GTTTCCACTAGCATGCCAACCTCCCTCATTGCTACCAAAACTACCACCAATTTCATAATCATTGC
* *
9671 TACCACCCCAACCACTGTTACGACCACCCCCACGTCCATTACGTCCACGTCCAC
66 TACCACCCCAACCACTGCTACGACCACCCCCACATCCATTACGTCCACGTCCAC
9725 GTCCACGTCC
Statistics
Matches: 103, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
126 103 1.00
ACGTcount: A:0.23, C:0.42, G:0.10, T:0.24
Consensus pattern (126 bp):
GTTTCCACTAGCATGCCAACCTCCCTCATTGCTACCAAAACTACCACCAATTTCATAATCATTGC
TACCACCCCAACCACTGCTACGACCACCCCCACATCCATTACGTCCACGTCCACCCCTATT
Found at i:9712 original size:21 final size:21
Alignment explanation
Indices: 9688--9729 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
9678 CCAACCACTG
9688 TTACGACCACCCCCACGTCCA
1 TTACGACCACCCCCACGTCCA
* **
9709 TTACGTCCACGTCCACGTCCA
1 TTACGACCACCCCCACGTCCA
9730 CGTCCACCCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.48, G:0.12, T:0.19
Consensus pattern (21 bp):
TTACGACCACCCCCACGTCCA
Found at i:9720 original size:6 final size:6
Alignment explanation
Indices: 9711--9736 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
9701 CACGTCCATT
9711 ACGTCC ACGTCC ACGTCC ACGTCC AC
1 ACGTCC ACGTCC ACGTCC ACGTCC AC
9737 CCCCATTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.50, G:0.15, T:0.15
Consensus pattern (6 bp):
ACGTCC
Found at i:9755 original size:138 final size:135
Alignment explanation
Indices: 9586--9843 Score: 367
Period size: 138 Copynumber: 1.9 Consensus size: 135
9576 ACATCCATTG
* * *
9586 CGTCCACGTCCACCCCTATTGTTTCCACTAGCATGCCAACCTCCCTCATTGCTACCCAAGCTACC
1 CGTCCACGTCCACCCCCATTGTTTCCACTAGCATGCCAAACTCCCTCATTGCTACCAAAGCTACC
*
9651 ACCAATTTCATCCTCATT-GCTAC-CACCCCAACCACTGTTACGACCACCCCCACGTCCATTACG
66 ACCAATTTCATCCTC-TTCGCT-CTCACCCCAACCACTATT---ACCACCCCCACGTCCATTACG
9714 TCCACGTCCA
126 TCCACGTCCA
** *
9724 CGTCCACGTCCACCCCCATTGTTTCCACTAGCATGCCAAACTCCCTCATTGCTATTAAAGCTGCC
1 CGTCCACGTCCACCCCCATTGTTTCCACTAGCATGCCAAACTCCCTCATTGCTACCAAAGCTACC
* * *
9789 ACCACTTTCTTCCTCTTCGCTCTGACCCCAACCACTATTACCACCCCCACGTCCA
66 ACCAATTTCATCCTCTTCGCTCTCACCCCAACCACTATTACCACCCCCACGTCCA
9844 GGACCATGAT
Statistics
Matches: 108, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
135 16 0.15
137 3 0.03
138 89 0.82
ACGTcount: A:0.22, C:0.45, G:0.09, T:0.24
Consensus pattern (135 bp):
CGTCCACGTCCACCCCCATTGTTTCCACTAGCATGCCAAACTCCCTCATTGCTACCAAAGCTACC
ACCAATTTCATCCTCTTCGCTCTCACCCCAACCACTATTACCACCCCCACGTCCATTACGTCCAC
GTCCA
Found at i:18379 original size:15 final size:17
Alignment explanation
Indices: 18353--18384 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
18343 GGAGCCACTT
18353 TGAAATATGTAC-TTAA
1 TGAAATATGTACATTAA
18369 TGAAA-ATGTACATTAA
1 TGAAATATGTACATTAA
18385 AAAAAAAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.34
Consensus pattern (17 bp):
TGAAATATGTACATTAA
Found at i:18427 original size:2 final size:2
Alignment explanation
Indices: 18420--18492 Score: 146
Period size: 2 Copynumber: 36.5 Consensus size: 2
18410 TGCTATACTT
18420 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
18462 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 71 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Done.