Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016501.1 Corchorus capsularis cultivar CVL-1 contig16522, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105995

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
681--971
35
8.3
35
87
4
333
32
18
19
28
1.96
681--1707
70
14.7
69
88
5
543
33
21
16
29
1.95
884--1727
35
24.1
35
92
1
1390
33
22
15
29
1.94
2883--2959
37
2.1
36
85
2
100
40
12
11
35
1.80
3655--3711
18
3.1
19
78
17
66
1
15
5
77
1.03
3664--3702
14
2.6
15
88
8
53
0
12
5
82
0.83
3663--3706
15
2.9
15
90
10
63
0
13
4
81
0.83
7014--7069
25
2.2
25
87
3
76
26
5
10
57
1.54
7080--7204
66
1.9
66
82
9
157
32
14
7
46
1.72
22804--23148
58
5.9
58
97
0
654
41
25
13
19
1.88
24422--24906
72
6.7
73
92
1
669
21
27
19
31
1.97
28148--28257
39
2.8
39
79
9
116
42
26
11
19
1.85
29725--29778
28
1.9
28
84
0
72
38
7
9
44
1.65
30490--30754
107
2.5
107
89
2
401
43
9
7
40
1.65
30965--30995
15
2.0
16
93
6
55
41
0
0
58
0.98
32143--32173
15
2.0
16
93
6
55
58
0
0
41
0.98
33298--33330
15
2.2
15
94
0
57
33
24
21
21
1.97
34158--34257
50
2.0
50
88
0
146
39
17
20
24
1.92
36409--36433
2
12.5
2
100
0
50
52
0
0
48
1.00
39664--39717
14
4.0
14
74
13
51
68
5
3
22
1.26
42078--42106
2
14.5
2
100
0
58
48
0
0
51
1.00
42979--43090
41
2.7
42
83
6
124
53
6
19
20
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42999--43097
40
2.4
42
83
9
125
53
7
18
21
1.67
43106--43483
22
17.1
22
72
19
220
51
5
21
21
1.67
43106--43483
87
4.5
86
76
13
357
51
5
21
21
1.67
43196--43280
36
2.3
38
82
9
115
54
3
21
21
1.60
43361--43438
21
3.7
21
83
8
104
50
7
24
17
1.73
43335--43438
42
2.4
41
92
7
172
50
6
23
20
1.72
43464--43519
22
2.5
22
82
5
51
57
3
17
21
1.55
43482--43529
22
2.2
21
81
3
60
60
6
16
16
1.55
50768--50894
62
2.0
62
100
0
254
30
18
20
29
1.97
54287--54323
17
2.1
19
85
10
51
54
2
24
18
1.57
54865--54902
8
4.8
8
100
0
76
39
10
0
50
1.37
55538--55590
2
24.5
2
85
14
70
45
7
0
47
1.31
62827--62853
11
2.5
11
100
0
54
62
0
0
37
0.95
64162--64210
3
16.7
3
87
4
73
61
4
0
34
1.15
64160--64198
20
2.0
20
100
0
78
64
0
0
35
0.94
66558--66624
2
33.0
2
82
8
64
41
8
1
47
1.44
70783--70834
24
2.1
25
82
7
61
55
23
1
19
1.53
82124--82271
74
2.0
74
97
0
278
31
22
16
29
1.96
84678--84711
8
4.1
8
92
7
59
11
0
0
88
0.52
84677--84709
9
3.8
9
92
8
59
9
0
0
90
0.44
84677--84711
17
2.1
17
100
0
70
11
0
0
88
0.51
99228--99300
17
4.4
17
67
19
55
61
9
21
6
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99548--99592
22
2.0
22
100
0
90
20
26
26
26
1.99
99648--99702
4
13.8
4
100
0
110
25
0
23
50
1.49
100463--100574
36
3.4
36
67
23
100
34
13
23
28
1.92
100402--100669
62
4.3
62
90
2
389
35
13
23
27
1.92
102751--102929
88
2.0
88
100
0
358
27
11
18
41
1.85
104361--104464
41
2.7
38
89
4
154
46
8
16
28
1.76

Tables:   1

The End!