Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016502.1 Corchorus capsularis cultivar CVL-1 contig16523, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44808

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
983--1012
13
2.4
12
89
10
51
16
0
0
83
0.65
1069--1098
6
5.0
6
91
0
51
16
13
66
3
1.37
1324--1376
22
2.4
22
87
6
72
33
13
7
45
1.71
1335--1381
22
2.1
23
92
4
78
34
14
8
42
1.77
1408--1456
22
2.2
22
88
0
71
28
14
4
53
1.59
2690--2729
21
1.9
21
100
0
80
30
35
15
20
1.93
2938--3103
55
3.0
54
86
6
226
21
26
18
33
1.96
2988--3080
26
3.5
26
64
18
73
23
25
17
33
1.96
3145--3187
23
2.0
23
81
9
54
4
37
16
41
1.69
5465--5496
2
16.0
2
100
0
64
50
0
0
50
1.00
6386--6694
159
1.9
159
94
1
539
41
7
21
29
1.81
21853--21878
6
4.3
6
100
0
52
15
19
50
15
1.79
27734--27766
15
2.2
16
89
10
52
30
24
15
30
1.95
37645--37681
18
2.1
18
94
0
65
32
21
0
45
1.52
38337--38368
16
2.0
16
100
0
64
50
18
12
18
1.78
39951--40195
130
1.9
128
86
5
350
41
11
23
23
1.87
40734--40774
8
5.2
8
97
2
75
90
9
0
0
0.46
44777--44808
3
10.7
3
100
0
64
65
0
0
34
0.93

Tables:   1

The End!