Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016503.1 Corchorus capsularis cultivar CVL-1 contig16524, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58334

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--67
2
32.5
2
100
0
130
0
49
0
50
1.00
3320--3369
21
2.4
21
80
6
57
26
14
30
30
1.94
10186--10273
43
2.0
43
100
0
176
28
15
25
30
1.96
11617--11993
22
17.0
22
67
9
183
36
10
16
36
1.84
11824--11875
26
2.0
26
84
0
68
38
13
13
34
1.84
19657--19690
16
2.2
16
89
5
52
29
2
8
58
1.43
35995--36035
2
22.0
2
85
14
61
48
0
0
51
1.00
40198--40474
138
2.0
138
100
0
554
41
32
8
18
1.80
48403--48453
25
2.0
26
96
3
95
52
11
7
27
1.65
51566--51602
7
5.7
7
87
12
53
59
0
0
40
0.97
51566--51601
16
2.4
15
90
9
56
58
0
0
41
0.98

Tables:   1

The End!