Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016506.1 Corchorus capsularis cultivar CVL-1 contig16527, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12185
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30


Found at i:9151 original size:8 final size:8

Alignment explanation


    Indices: 9138--9163  Score: 52
    Period size: 8  Copynumber: 3.2  Consensus size: 8

       9128 CTTGAAGATA

                    
       9138 ATTTGAAG
          1 ATTTGAAG

                    
       9146 ATTTGAAG
          1 ATTTGAAG

                    
       9154 ATTTGAAG
          1 ATTTGAAG

              
       9162 AT
          1 AT

       9164 CATTGAAGAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   18  1.00

ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38


Consensus pattern (8 bp):   
ATTTGAAG

Found at i:10918 original size:2 final size:2

Alignment explanation


    Indices: 10911--10956  Score: 51
    Period size: 2  Copynumber: 23.5  Consensus size: 2

      10901 TGAGGAAAAC

                                                    *     *                
      10911 TA TA TA TA TA TA TA TA TA TA TA TA T- TT TGA GA TA -A TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA

                   
      10952 TA TA T
          1 TA TA T

      10957 TAATAATTAG


Statistics
Matches: 38,  Mismatches: 3, Indels: 6
        0.81            0.06        0.13

Matches are distributed among these distances:
   1    2  0.05
   2   36  0.95

ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50


Consensus pattern (2 bp):   
TA

Done.