Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016509.1 Corchorus capsularis cultivar CVL-1 contig16530, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43259

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4493--4537
22
2.1
21
88
8
65
13
24
33
28
1.93
14419--14505
42
2.1
42
84
0
111
11
27
40
20
1.87
14791--14914
41
2.9
42
79
4
142
25
12
24
38
1.89
18032--18361
41
8.1
41
74
11
211
21
11
25
41
1.87
18032--18361
82
4.0
81
87
3
450
21
11
25
41
1.87
18084--18361
123
2.3
123
80
5
319
21
11
26
41
1.86
18993--19085
35
2.7
35
84
0
114
26
7
36
29
1.84
19565--19990
209
2.0
209
99
0
843
24
14
29
31
1.95
24687--24736
21
2.3
21
79
3
55
78
4
8
10
1.09
27342--27410
30
2.3
31
82
2
86
28
18
15
36
1.92
27986--28057
32
2.2
32
82
4
83
58
5
29
6
1.47
29489--29528
3
13.3
3
94
0
71
32
2
0
65
1.06
36815--36878
30
2.1
30
88
0
92
7
32
35
23
1.84
36880--36907
14
2.0
14
100
0
56
14
21
42
21
1.88

Tables:   1

The End!