Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016516.1 Corchorus capsularis cultivar CVL-1 contig16537, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54721

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4365--4398
8
4.1
8
85
7
50
23
2
14
58
1.50
5301--5423
33
3.7
33
80
8
133
6
27
42
23
1.79
6581--6698
42
2.8
42
92
3
202
33
23
4
38
1.74
7087--7325
119
2.0
118
91
4
392
37
10
13
38
1.79
9122--9172
25
2.1
24
89
7
77
13
9
17
58
1.61
9512--9571
28
2.1
28
84
6
77
50
16
8
25
1.73
13289--13329
17
2.4
17
83
0
55
34
0
24
41
1.55
15936--15984
25
2.0
25
88
8
73
61
0
0
38
0.96
15936--16016
22
3.5
24
69
19
64
59
1
1
38
1.13
19389--19427
20
2.0
20
89
0
60
43
0
43
12
1.42
25182--25210
2
14.5
2
100
0
58
48
0
0
51
1.00
30301--30340
18
2.0
21
86
13
59
32
2
17
47
1.61
30629--30674
22
2.1
22
91
0
74
28
17
39
15
1.90
36562--36704
50
3.2
42
75
19
121
39
7
9
43
1.67
43241--43343
51
2.0
51
87
7
147
24
22
13
39
1.90
44428--44452
13
1.9
13
100
0
50
56
0
0
44
0.99
45150--45180
11
2.8
11
90
0
53
35
22
9
32
1.87
47212--47245
17
2.0
17
100
0
68
29
41
5
23
1.78
49639--49830
40
4.7
41
84
6
248
31
14
18
35
1.91
50184--50236
24
2.1
26
86
6
74
28
15
15
41
1.87
50184--50230
13
3.8
13
77
11
53
29
17
12
40
1.86
50503--50598
48
2.0
48
100
0
192
27
29
25
18
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51330--51356
13
2.1
13
100
0
54
14
37
14
33
1.88
52926--52962
2
18.5
2
100
0
74
48
0
0
51
1.00

Tables:   1

The End!