Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01016519.1 Corchorus capsularis cultivar CVL-1 contig16540, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7217
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Found at i:1887 original size:27 final size:28
Alignment explanation
Indices: 1835--1896 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 28
1825 AAAGTGTACT
*
1835 AAAAATGACAAAAATGCCCCTGAATG-C
1 AAAAATGACAAAAATGCCCCTAAATGAC
*
1862 AAAAATGACCAAAATG-CCCTCAAATGAC
1 AAAAATGACAAAAATGCCCCT-AAATGAC
*
1890 CAAAATG
1 AAAAATG
1897 TCCTTGGGCG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 4 0.13
27 19 0.63
28 7 0.23
ACGTcount: A:0.50, C:0.23, G:0.13, T:0.15
Consensus pattern (28 bp):
AAAAATGACAAAAATGCCCCTAAATGAC
Found at i:2183 original size:33 final size:33
Alignment explanation
Indices: 2146--2213 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
2136 CAATCGGATC
*
2146 AATCTGAAGAAAAACAAATCTACTCACCGAATA
1 AATCTGAACAAAAACAAATCTACTCACCGAATA
* *
2179 AATCTGATCAAAAACAAATCTATTCACCGAATA
1 AATCTGAACAAAAACAAATCTACTCACCGAATA
2212 AA
1 AA
2214 CCTAAATTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.51, C:0.21, G:0.07, T:0.21
Consensus pattern (33 bp):
AATCTGAACAAAAACAAATCTACTCACCGAATA
Found at i:3240 original size:30 final size:30
Alignment explanation
Indices: 3189--3256 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
3179 TAAAAGGGAG
*
3189 ATCAGTAATTAAGTTCAATAAGA-AATAGTA
1 ATCAGTAATTAAGTTCAATAAGAGAA-AGCA
* * *
3219 ATCAGTGATTAGGTTCGATAAGAGAAAGCA
1 ATCAGTAATTAAGTTCAATAAGAGAAAGCA
3249 ATCAGTAA
1 ATCAGTAA
3257 AGAGTAAGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 30 0.94
31 2 0.06
ACGTcount: A:0.46, C:0.09, G:0.19, T:0.26
Consensus pattern (30 bp):
ATCAGTAATTAAGTTCAATAAGAGAAAGCA
Found at i:3494 original size:18 final size:19
Alignment explanation
Indices: 3471--3506 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
3461 TAAGAAGAGG
3471 AAAGTAA-ATGGTAATCAA
1 AAAGTAAGATGGTAATCAA
3489 AAAGTAAGATGGTAATCA
1 AAAGTAAGATGGTAATCA
3507 GTAAAGGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.53, C:0.06, G:0.19, T:0.22
Consensus pattern (19 bp):
AAAGTAAGATGGTAATCAA
Found at i:3700 original size:20 final size:20
Alignment explanation
Indices: 3675--3762 Score: 64
Period size: 20 Copynumber: 4.7 Consensus size: 20
3665 AGTGAGAGTA
3675 AAATAGTAATCAGAAAAAGT
1 AAATAGTAATCAGAAAAAGT
* *
3695 AAATAGTAAT--TAATAAG-
1 AAATAGTAATCAGAAAAAGT
* *
3712 --A-AGTAATCAGTGAGAA-T
1 AAATAGTAATCAG-AAAAAGT
*
3729 AAAATAGTAATCAGAAAGAGT
1 -AAATAGTAATCAGAAAAAGT
3750 AAATAGTAATCAG
1 AAATAGTAATCAG
3763 TGAGAAGTAA
Statistics
Matches: 51, Mismatches: 8, Indels: 18
0.66 0.10 0.23
Matches are distributed among these distances:
14 6 0.12
15 1 0.02
17 3 0.06
18 5 0.10
20 26 0.51
21 10 0.20
ACGTcount: A:0.56, C:0.05, G:0.17, T:0.23
Consensus pattern (20 bp):
AAATAGTAATCAGAAAAAGT
Found at i:3711 original size:55 final size:55
Alignment explanation
Indices: 3645--3871 Score: 230
Period size: 55 Copynumber: 4.1 Consensus size: 55
3635 AAGCAAAAAG
*
3645 GTAATCAATAAGAAGTAATCAGTGAGAGTAAAATAGTAATCAGAAAAAGTAAATA
1 GTAATCAATAAGAAGTAATCAGTAAGAGTAAAATAGTAATCAGAAAAAGTAAATA
* * * *
3700 GTAATTAATAAGAAGTAATCAGTGAGAATAAAATAGTAATCAGAAAGAGTAAATA
1 GTAATCAATAAGAAGTAATCAGTAAGAGTAAAATAGTAATCAGAAAAAGTAAATA
* * * *
3755 GTAATCAGTGAGAAGTAATCAGTAAAAGGTAAAA-AGGTAATCAGCAAGAA-TGAAATA
1 GTAATCAATAAGAAGTAATCAGTAAGA-GTAAAATA-GTAATCAG-AAAAAGT-AAATA
* * * * ** *
3812 GTAA-GAGTAAG-AGATAATCAGTAAGAG-CAAATAGTAATCAGTAAGTGTAAAGA
1 GTAATCAATAAGAAG-TAATCAGTAAGAGTAAAATAGTAATCAGAAAAAGTAAATA
3865 GTAATCA
1 GTAATCA
3872 GTAAAGACAA
Statistics
Matches: 143, Mismatches: 21, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
53 9 0.06
54 13 0.09
55 79 0.55
56 30 0.21
57 12 0.08
ACGTcount: A:0.52, C:0.06, G:0.21, T:0.22
Consensus pattern (55 bp):
GTAATCAATAAGAAGTAATCAGTAAGAGTAAAATAGTAATCAGAAAAAGTAAATA
Found at i:3779 original size:21 final size:21
Alignment explanation
Indices: 3713--3772 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
3703 ATTAATAAGA
3713 AGTAATCAGTGAGAA-TAAAAT
1 AGTAATCAGTGAGAAGT-AAAT
**
3734 AGTAATCAGAAAG-AGTAAAT
1 AGTAATCAGTGAGAAGTAAAT
3754 AGTAATCAGTGAGAAGTAA
1 AGTAATCAGTGAGAAGTAA
3773 TCAGTAAAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 16 0.48
21 17 0.52
ACGTcount: A:0.52, C:0.05, G:0.22, T:0.22
Consensus pattern (21 bp):
AGTAATCAGTGAGAAGTAAAT
Found at i:3834 original size:20 final size:20
Alignment explanation
Indices: 3811--3875 Score: 87
Period size: 20 Copynumber: 3.2 Consensus size: 20
3801 AGAATGAAAT
3811 AGTAAGAGT-AAGAGATAATC
1 AGTAAGAGTAAAGAG-TAATC
* *
3831 AGTAAGAGCAAATAGTAATC
1 AGTAAGAGTAAAGAGTAATC
*
3851 AGTAAGTGTAAAGAGTAATC
1 AGTAAGAGTAAAGAGTAATC
3871 AGTAA
1 AGTAA
3876 AGACAAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
20 35 0.90
21 4 0.10
ACGTcount: A:0.49, C:0.06, G:0.23, T:0.22
Consensus pattern (20 bp):
AGTAAGAGTAAAGAGTAATC
Found at i:5023 original size:17 final size:18
Alignment explanation
Indices: 5003--5037 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
4993 TTACCATTTT
*
5003 TTACTCTTTT-TTACTGA
1 TTACCCTTTTCTTACTGA
5020 TTACCCTTTTCTTACTGA
1 TTACCCTTTTCTTACTGA
5038 ATGCCATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.17, C:0.23, G:0.06, T:0.54
Consensus pattern (18 bp):
TTACCCTTTTCTTACTGA
Found at i:5071 original size:27 final size:26
Alignment explanation
Indices: 5020--5190 Score: 148
Period size: 27 Copynumber: 6.3 Consensus size: 26
5010 TTTTTACTGA
* * *
5020 TTACCCTTTTCTTACTGAATGCCATATT
1 TTACTCTTTT-TTACTGATTACCAT-TT
*
5048 TTACTCTTTTTTACTGATCACCATTT
1 TTACTCTTTTTTACTGATTACCATTT
* *
5074 CTTACTCTTTATTACTAATTACTC-TCTT
1 -TTACTCTTTTTTACTGATTAC-CAT-TT
* * * *
5102 TTACCCTTTTGTACTAATCACCATTTT
1 TTACTCTTTTTTACTGATTACCA-TTT
*
5129 TTACTCTTTTTT-CTGATTACTCTTTT
1 TTACTCTTTTTTACTGATTAC-CATTT
5155 CTTACTCTTTTTTACTGATTACCACTTT
1 -TTACTCTTTTTTACTGATTACCA-TTT
5183 TTACTCTT
1 TTACTCTT
5191 CTTCTTTTTC
Statistics
Matches: 117, Mismatches: 17, Indels: 19
0.76 0.11 0.12
Matches are distributed among these distances:
26 12 0.10
27 81 0.69
28 24 0.21
ACGTcount: A:0.19, C:0.24, G:0.04, T:0.54
Consensus pattern (26 bp):
TTACTCTTTTTTACTGATTACCATTT
Found at i:5207 original size:39 final size:36
Alignment explanation
Indices: 5145--5228 Score: 105
Period size: 39 Copynumber: 2.2 Consensus size: 36
5135 TTTTTTCTGA
* *
5145 TTACTCTTTTCTTACTCTTTTTTACTGATTACCACTTT
1 TTACTCTTTTCTTACTCTCTTTTACTGACTACCA--TT
**
5183 TTACTCTTCTTCTTTTTCTCTTTTACTGACTACCATT
1 TTACTCTT-TTCTTACTCTCTTTTACTGACTACCATT
5220 TTACTCTTT
1 TTACTCTTT
5229 GAATTTAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
36 1 0.02
37 10 0.24
38 8 0.20
39 22 0.54
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.58
Consensus pattern (36 bp):
TTACTCTTTTCTTACTCTCTTTTACTGACTACCATT
Found at i:5354 original size:53 final size:51
Alignment explanation
Indices: 5288--5569 Score: 193
Period size: 53 Copynumber: 5.7 Consensus size: 51
5278 CTTTTTTTAT
*
5288 TGATTACTATTTTACTCTTACTAATTACCATTACTTTTTGAATCTTGATTAC
1 TGATTACT-TTTTACTCTTACTGATTACCATTACTTTTTGAATCTTGATTAC
* *
5340 TGATTACCCTTTTTACTTTTACTG-TTAACTATTACTTTTT--A-C-TGATTAC
1 TGATTA--CTTTTTACTCTTACTGATT-ACCATTACTTTTTGAATCTTGATTAC
* * * * * *
5389 T-ATTACTTTTTA--CTGA-TTATCA-CTTTACTCTTTGAAT-TTAATTAC
1 TGATTACTTTTTACTCTTACTGATTACCATTACTTTTTGAATCTTGATTAC
* * * * ** *
5434 TGACTATCATTTTACTCTTTACTGATT---ATT--TTTTTTACT-TTTTTTAT
1 TGATTA-CTTTTTACTC-TTACTGATTACCATTACTTTTTGAATCTTGATTAC
5481 TGATTACTATTTTACTCTTACTGATTACCATTACTTTTTGAATCTTGATTAC
1 TGATTACT-TTTTACTCTTACTGATTACCATTACTTTTTGAATCTTGATTAC
* * *
5533 TGATTACCCTTTTTACTTTTACTGTTTACTATTACTT
1 TGATTA--CTTTTTACTCTTACTGATTACCATTACTT
5570 CTTACTGATT
Statistics
Matches: 174, Mismatches: 33, Indels: 45
0.69 0.13 0.18
Matches are distributed among these distances:
42 8 0.05
43 2 0.01
44 4 0.02
45 7 0.04
46 20 0.11
47 30 0.17
48 4 0.02
49 14 0.08
50 3 0.02
51 11 0.06
52 19 0.11
53 48 0.28
54 4 0.02
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (51 bp):
TGATTACTTTTTACTCTTACTGATTACCATTACTTTTTGAATCTTGATTAC
Found at i:5381 original size:20 final size:20
Alignment explanation
Indices: 5352--5900 Score: 119
Period size: 20 Copynumber: 25.8 Consensus size: 20
5342 ATTACCCTTT
5352 TTAC-TTTTACTG-TTAACTA
1 TTACTTTTTACTGATT-ACTA
5371 TTACTTTTTACTGATTACTA
1 TTACTTTTTACTGATTACTA
5391 TTACTTTTTACTGATTA-TCA
1 TTACTTTTTACTGATTACT-A
* * *
5411 CTTTACTCTTTGAATTTAATTACTGA
1 --TTACT-TTT-TA-CTGATTACT-A
* * **
5437 CTATCATTTTACTCTTTACTGA
1 TTA-CTTTTTACTGATTACT-A
5459 TTA-TTTTT--T--TTAC--
1 TTACTTTTTACTGATTACTA
*
5472 TT--TTTTTATTGATTACTA
1 TTACTTTTTACTGATTACTA
* *
5490 TTTTAC-TCTTACTGATTACCA
1 --TTACTTTTTACTGATTACTA
5511 TTACTTTTTGAATCTTGATTACTGA
1 TTACTTTTT--A-C-TGATTACT-A
*
5536 TTACCCTTTTTACTTTTACTGTTTACTA
1 TTA--CTTTTTAC--TGA---TT-ACTA
*
5564 TTACTTCTTACTGATTACTA
1 TTACTTTTTACTGATTACTA
* *
5584 TTAGTCTTTACTGATTA-TCA
1 TTACTTTTTACTGATTACT-A
* * *
5604 CTTTACTCTTTACTAATTACCATT
1 --TTACTTTTTACTGATTA-C-TA
** * *
5628 TTACCCTTTACAGA-TACCTTT
1 TTACTTTTTACTGATTA-C-TA
*
5649 TTACTTTTTACTGATTACCTTT
1 TTACTTTTTACTGATTA-C-TA
*
5671 TTACTTTTTTTTACTGTTTACTA
1 TTAC---TTTTTACTGATTACTA
* *
5694 TTACTTCTTACTGATTTCTA
1 TTACTTTTTACTGATTACTA
5714 TTACTTTTTACTGATTA-TCA
1 TTACTTTTTACTGATTACT-A
* * * *
5734 CTTTACTCTTTGCTAATTACCATT
1 --TTACTTTTTACTGATTA-C-TA
** * * *
5758 TTACCCTTT-CAGA-CACCTTT
1 TTACTTTTTACTGATTA-C-TA
*
5778 TTACTTTTTACTGATTACCTTT
1 TTACTTTTTACTGATTA-C-TA
*
5800 TTACTTTTTTACTGTTTACTA
1 TTAC-TTTTTACTGATTACTA
* *
5821 TTACTTCTTACTGATTTCTA
1 TTACTTTTTACTGATTACTA
*
5841 TTACTTCTTACTGATTA-TCA
1 TTACTTTTTACTGATTACT-A
* *
5861 CTTTACTCTTTACTGATTATCATT
1 --TTACTTTTTACTGATTA-C-TA
*
5885 TTACCTTTTACTGATT
1 TTACTTTTTACTGATT
5901 GCATCTTTCT
Statistics
Matches: 408, Mismatches: 64, Indels: 113
0.70 0.11 0.19
Matches are distributed among these distances:
12 5 0.01
13 2 0.00
14 1 0.00
16 8 0.02
18 1 0.00
19 12 0.03
20 129 0.32
21 43 0.11
22 115 0.28
23 22 0.05
24 17 0.04
25 29 0.07
26 9 0.02
27 6 0.01
28 6 0.01
29 3 0.01
ACGTcount: A:0.22, C:0.19, G:0.05, T:0.54
Consensus pattern (20 bp):
TTACTTTTTACTGATTACTA
Found at i:5403 original size:193 final size:193
Alignment explanation
Indices: 5203--5614 Score: 743
Period size: 193 Copynumber: 2.1 Consensus size: 193
5193 TCTTTTTCTC
* * *
5203 TTTTACTGACTACCATTTTACTCTTTGAATTTAATTACTGACTATCATTTTACTCTTTACGGATT
1 TTTTACTGATTATCACTTTACTCTTTGAATTTAATTACTGACTATCATTTTACTCTTTACGGATT
5268 ATTTTTTTTACTTTTTTTATTGATTACTATTTTACTCTTACTAATTACCATTACTTTTTGAATCT
66 ATTTTTTTTACTTTTTTTATTGATTACTATTTTACTCTTACTAATTACCATTACTTTTTGAATCT
*
5333 TGATTACTGATTACCCTTTTTACTTTTACTGTTAACTATTACTTTTTACTGATTACTATTACT
131 TGATTACTGATTACCCTTTTTACTTTTACTGTTAACTATTACTTCTTACTGATTACTATTACT
*
5396 TTTTACTGATTATCACTTTACTCTTTGAATTTAATTACTGACTATCATTTTACTCTTTACTGATT
1 TTTTACTGATTATCACTTTACTCTTTGAATTTAATTACTGACTATCATTTTACTCTTTACGGATT
*
5461 ATTTTTTTTACTTTTTTTATTGATTACTATTTTACTCTTACTGATTACCATTACTTTTTGAATCT
66 ATTTTTTTTACTTTTTTTATTGATTACTATTTTACTCTTACTAATTACCATTACTTTTTGAATCT
* *
5526 TGATTACTGATTACCCTTTTTACTTTTACTGTTTACTATTACTTCTTACTGATTACTATTAGT
131 TGATTACTGATTACCCTTTTTACTTTTACTGTTAACTATTACTTCTTACTGATTACTATTACT
*
5589 CTTTACTGATTATCACTTTACTCTTT
1 TTTTACTGATTATCACTTTACTCTTT
5615 ACTAATTACC
Statistics
Matches: 210, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
193 210 1.00
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (193 bp):
TTTTACTGATTATCACTTTACTCTTTGAATTTAATTACTGACTATCATTTTACTCTTTACGGATT
ATTTTTTTTACTTTTTTTATTGATTACTATTTTACTCTTACTAATTACCATTACTTTTTGAATCT
TGATTACTGATTACCCTTTTTACTTTTACTGTTAACTATTACTTCTTACTGATTACTATTACT
Found at i:5556 original size:22 final size:20
Alignment explanation
Indices: 5529--5900 Score: 156
Period size: 22 Copynumber: 17.4 Consensus size: 20
5519 TGAATCTTGA
5529 TTACTGATTACCCTTTTTACTT
1 TTACTGATTA-CC-TTTTACTT
* *
5551 TTACTGTTTA-CTATTACTT
1 TTACTGATTACCTTTTACTT
* *
5570 CTTACTGATTA-CTATTAGTCT
1 -TTACTGATTACCTTTTACT-T
5591 TTACTGATTATCAC-TTTACTCT
1 TTACTGATTA-C-CTTTTACT-T
* *
5613 TTACTAATTACCATTTTACCCT
1 TTACTGATTACC-TTTTA-CTT
*
5635 TTACAGA-TACCTTTTTACTTT
1 TTACTGATTACC-TTTTAC-TT
5656 TTACTGATTACCTTTTTACTTTTTT
1 TTACTGATTACC-TTTTAC----TT
* *
5681 TTACTGTTTA-CTATTACTT
1 TTACTGATTACCTTTTACTT
* *
5700 CTTACTGATT-TCTATTACTTT
1 -TTACTGATTACCTTTTAC-TT
5721 TTACTGATTATCAC-TTTACTCT
1 TTACTGATTA-C-CTTTTACT-T
* * *
5743 TTGCTAATTACCATTTTACCCT
1 TTACTGATTACC-TTTTA-CTT
* *
5765 TT-CAGA-CACCTTTTTACTTT
1 TTACTGATTACC-TTTTAC-TT
5785 TTACTGATTACCTTTTTACTTTT
1 TTACTGATTACC-TTTTAC--TT
* *
5808 TTACTGTTTA-CTATTACTT
1 TTACTGATTACCTTTTACTT
* *
5827 CTTACTGATT-TCTATTACTT
1 -TTACTGATTACCTTTTACTT
5847 CTTACTGATTATCAC-TTTACTCT
1 -TTACTGATTA-C-CTTTTACT-T
*
5870 TTACTGATTATCATTTTACCTT
1 TTACTGATTA-CCTTTTA-CTT
5892 TTACTGATT
1 TTACTGATT
5901 GCATCTTTCT
Statistics
Matches: 281, Mismatches: 34, Indels: 70
0.73 0.09 0.18
Matches are distributed among these distances:
19 12 0.04
20 92 0.33
21 32 0.11
22 107 0.38
23 25 0.09
24 1 0.00
25 12 0.04
ACGTcount: A:0.21, C:0.20, G:0.05, T:0.53
Consensus pattern (20 bp):
TTACTGATTACCTTTTACTT
Found at i:5855 original size:127 final size:128
Alignment explanation
Indices: 5529--5895 Score: 598
Period size: 127 Copynumber: 2.9 Consensus size: 128
5519 TGAATCTTGA
* *
5529 TTACTGATTACCCTTTTTAC--TTTTACTGTTTACTATTACTTCTTACTGATTACTATTA-GTCT
1 TTACTGATTA-CCTTTTTACTTTTTTACTGTTTACTATTACTTCTTACTGATTTCTATTACTTC-
*
5591 TTACTGATTATCACTTTACTCTTTACTAATTACCATTTTACCCTTTACAGATACCTTTTTACTTT
64 TTACTGATTATCACTTTACTCTTTACTAATTACCATTTTACCCTTTACAGACACCTTTTTACTTT
*
5656 TTACTGATTACCTTTTTACTTTTTTTTACTGTTTACTATTACTTCTTACTGATTTCTATTACTTT
1 TTACTGATTACCTTTTTAC--TTTTTTACTGTTTACTATTACTTCTTACTGATTTCTATTACTTC
*
5721 TTACTGATTATCACTTTACTCTTTGCTAATTACCATTTTACCCTTT-CAGACACCTTTTTACTTT
64 TTACTGATTATCACTTTACTCTTTACTAATTACCATTTTACCCTTTACAGACACCTTTTTACTTT
5785 TTACTGATTACCTTTTTACTTTTTTACTGTTTACTATTACTTCTTACTGATTTCTATTACTTCTT
1 TTACTGATTACCTTTTTACTTTTTTACTGTTTACTATTACTTCTTACTGATTTCTATTACTTCTT
* * *
5850 ACTGATTATCACTTTACTCTTTACTGATTATCATTTTACCTTTTAC
66 ACTGATTATCACTTTACTCTTTACTAATTACCATTTTACCCTTTAC
5896 TGATTGCATC
Statistics
Matches: 224, Mismatches: 10, Indels: 11
0.91 0.04 0.04
Matches are distributed among these distances:
126 9 0.04
127 95 0.42
128 1 0.00
129 36 0.16
130 82 0.37
131 1 0.00
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.53
Consensus pattern (128 bp):
TTACTGATTACCTTTTTACTTTTTTACTGTTTACTATTACTTCTTACTGATTTCTATTACTTCTT
ACTGATTATCACTTTACTCTTTACTAATTACCATTTTACCCTTTACAGACACCTTTTTACTTT
Done.