Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016521.1 Corchorus capsularis cultivar CVL-1 contig16542, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16446

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3731--3765
5
7.0
5
87
12
54
20
0
0
80
0.72
3839--3872
8
4.1
8
85
7
50
23
2
14
58
1.50
6341--6589
21
11.7
21
77
10
224
53
5
20
20
1.65
6339--6644
21
14.3
21
74
12
152
55
5
19
18
1.63
6347--6614
42
6.3
43
82
5
312
53
6
20
19
1.67
6347--6640
22
13.7
21
75
11
222
54
6
20
19
1.65
6648--6769
7
18.4
7
67
17
73
58
1
23
16
1.47
6616--6773
46
3.4
46
79
9
178
58
1
22
16
1.47
6648--6769
19
6.6
18
67
22
65
58
1
23
16
1.47
6663--6750
27
3.5
27
66
20
73
60
2
21
15
1.46
6704--6769
19
3.4
19
79
4
78
56
1
27
15
1.48
9703--9753
14
3.7
14
75
19
54
45
5
11
37
1.65
9703--9759
27
2.1
27
87
9
82
40
5
14
40
1.68
10414--10446
16
2.0
17
94
5
59
78
0
21
0
0.75
11017--11056
15
2.5
16
88
12
64
80
0
20
0
0.72
12189--12446
55
4.6
56
81
7
301
29
17
20
32
1.96
12220--12432
114
1.9
114
90
3
340
26
18
20
34
1.96
12403--12485
38
2.2
38
95
0
148
33
15
19
31
1.93
12347--12637
93
3.0
93
86
7
388
31
16
20
31
1.95
12441--12661
55
4.2
54
77
12
253
30
15
20
33
1.93
12712--12829
35
3.4
34
80
12
141
32
16
21
30
1.95
12796--12946
43
3.5
42
77
2
140
27
17
26
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12796--12909
42
2.7
42
83
1
138
28
16
24
30
1.97
12929--13293
90
4.1
89
82
4
421
26
16
26
31
1.96

Tables:   1

The End!