Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001667.1 Corchorus capsularis cultivar CVL-1 contig01667, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 776

Length: 1294
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.41


Found at i:138 original size:13 final size:13

Alignment explanation


    Indices: 120--149  Score: 51
    Period size: 13  Copynumber: 2.3  Consensus size: 13

        110 TCCAGAATTA

                    *    
        120 TATATATATATAT
          1 TATATATAAATAT

                         
        133 TATATATAAATAT
          1 TATATATAAATAT

                
        146 TATA
          1 TATA

        150 AACATGACCC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (13 bp):   
TATATATAAATAT
Done.