Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000167.1 Corchorus capsularis cultivar CVL-1 contig00167, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2431
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:462 original size:21 final size:21

Alignment explanation


    Indices: 438--481  Score: 72
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        428 TTAAAAATGG

                                  
        438 TAATCA-AGAGTTTTCAAGATT
          1 TAATCAGAG-GTTTTCAAGATT

                                 
        459 TAATCAGAGGTTTTCAAGATT
          1 TAATCAGAGGTTTTCAAGATT

              
        480 TA
          1 TA

        482 GTGAGAAGAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  21   20  0.91
  22    2  0.09

ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39


Consensus pattern (21 bp):   
TAATCAGAGGTTTTCAAGATT
Done.