Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001673.1 Corchorus capsularis cultivar CVL-1 contig01673, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 885

Length: 1475
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37


Found at i:471 original size:27 final size:27

Alignment explanation


    Indices: 440--493  Score: 99
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        430 TTTGTATTTA

                                 *     
        440 AATTATTGGTAACTTTCTTTTTTATAT
          1 AATTATTGGTAACTTTCTTTTCTATAT

                                       
        467 AATTATTGGTAACTTTCTTTTCTATAT
          1 AATTATTGGTAACTTTCTTTTCTATAT

        494 CTCGATTCAA


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  27   26  1.00

ACGTcount: A:0.26, C:0.09, G:0.07, T:0.57


Consensus pattern (27 bp):   
AATTATTGGTAACTTTCTTTTCTATAT

Found at i:1122 original size:19 final size:19

Alignment explanation


    Indices: 1098--1135  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       1088 ATCAAGTCCC

                               
       1098 TTTTTTATGTTGTGATGGA
          1 TTTTTTATGTTGTGATGGA

                               
       1117 TTTTTTATGTTGTGATGGA
          1 TTTTTTATGTTGTGATGGA

       1136 ATTCTTTGTA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.16, C:0.00, G:0.26, T:0.58


Consensus pattern (19 bp):   
TTTTTTATGTTGTGATGGA
Done.