Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000168.1 Corchorus capsularis cultivar CVL-1 contig00168, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1007
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:213 original size:12 final size:13

Alignment explanation


    Indices: 198--231  Score: 52
    Period size: 12  Copynumber: 2.7  Consensus size: 13

        188 AATCTAAATC

                   *     
        198 TAAAGCAGATT-A
          1 TAAAGCAAATTAA

                         
        210 TAAAGCAAATTAA
          1 TAAAGCAAATTAA

                     
        223 TAAAGCAAA
          1 TAAAGCAAA

        232 CAATAATTAT


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  12   10  0.50
  13   10  0.50

ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21


Consensus pattern (13 bp):   
TAAAGCAAATTAA

Done.