Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001684.1 Corchorus capsularis cultivar CVL-1 contig01684, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3283
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32


Found at i:3193 original size:2 final size:2

Alignment explanation


    Indices: 3188--3283  Score: 185
    Period size: 2  Copynumber: 48.5  Consensus size: 2

       3178 TAAAAAAAAA

                                                                          
       3188 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

                                                                          
       3230 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG -G AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

                               
       3271 AG AG AG AG AG AG A
          1 AG AG AG AG AG AG A


Statistics
Matches: 93,  Mismatches: 0, Indels: 2
        0.98            0.00        0.02

Matches are distributed among these distances:
   1    1  0.01
   2   92  0.99

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (2 bp):   
AG

Done.