Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001697.1 Corchorus capsularis cultivar CVL-1 contig01697, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 648

Length: 1081
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35


Found at i:120 original size:17 final size:17

Alignment explanation


    Indices: 98--131  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

         88 CCCTGCATCT

                      *      
         98 TCAAATAACTGGATAGA
          1 TCAAATAACTCGATAGA

                             
        115 TCAAATAACTCGATAGA
          1 TCAAATAACTCGATAGA

        132 ATAGATTCGC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.47, C:0.15, G:0.15, T:0.24


Consensus pattern (17 bp):   
TCAAATAACTCGATAGA
Done.