Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001698.1 Corchorus capsularis cultivar CVL-1 contig01698, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 605

Length: 1009
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36


Found at i:153 original size:19 final size:19

Alignment explanation


    Indices: 129--169  Score: 82
    Period size: 19  Copynumber: 2.2  Consensus size: 19

        119 TATAACAAAC

                               
        129 AGATAGATACAAATGGAAA
          1 AGATAGATACAAATGGAAA

                               
        148 AGATAGATACAAATGGAAA
          1 AGATAGATACAAATGGAAA

               
        167 AGA
          1 AGA

        170 ATGGATAAAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   22  1.00

ACGTcount: A:0.59, C:0.05, G:0.22, T:0.15


Consensus pattern (19 bp):   
AGATAGATACAAATGGAAA

Found at i:991 original size:19 final size:19

Alignment explanation


    Indices: 967--1004  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        957 AGAATTCTTT

                               
        967 TTCAATAGTTCAATAGAAA
          1 TTCAATAGTTCAATAGAAA

                               
        986 TTCAATAGTTCAATAGAAA
          1 TTCAATAGTTCAATAGAAA

       1005 AAAAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.47, C:0.11, G:0.11, T:0.32


Consensus pattern (19 bp):   
TTCAATAGTTCAATAGAAA
Done.