Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000170.1 Corchorus capsularis cultivar CVL-1 contig00170, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 657

Length: 1096
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.35

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:651 original size:27 final size:27

Alignment explanation


    Indices: 619--686  Score: 84
    Period size: 27  Copynumber: 2.5  Consensus size: 27

        609 ATCCAAGGGT

                                       
        619 ATTTTGATCATTTTCGCACCCAGGGGC
          1 ATTTTGATCATTTTCGCACCCAGGGGC

                  *       * *  *       
        646 ATTTTGGTCATTTTTGTACTCAGGGGC
          1 ATTTTGATCATTTTCGCACCCAGGGGC

                           
        673 ATTTT-AGTCATTTT
          1 ATTTTGA-TCATTTT

        687 TGGGTTCACC


Statistics
Matches: 35,  Mismatches: 5, Indels: 2
        0.83            0.12        0.05

Matches are distributed among these distances:
  27   35  1.00

ACGTcount: A:0.18, C:0.18, G:0.21, T:0.44


Consensus pattern (27 bp):   
ATTTTGATCATTTTCGCACCCAGGGGC
Done.