Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001704.1 Corchorus capsularis cultivar CVL-1 contig01704, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2384
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:963 original size:31 final size:31

Alignment explanation


    Indices: 928--995  Score: 136
    Period size: 31  Copynumber: 2.2  Consensus size: 31

        918 GGATACGGGA

                                           
        928 CGGATTTGGATAGTGAAACCACTATCTGTGG
          1 CGGATTTGGATAGTGAAACCACTATCTGTGG

                                           
        959 CGGATTTGGATAGTGAAACCACTATCTGTGG
          1 CGGATTTGGATAGTGAAACCACTATCTGTGG

                  
        990 CGGATT
          1 CGGATT

        996 CGGAGCGGAT


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   37  1.00

ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29


Consensus pattern (31 bp):   
CGGATTTGGATAGTGAAACCACTATCTGTGG

Found at i:1874 original size:15 final size:16

Alignment explanation


    Indices: 1844--1876  Score: 50
    Period size: 15  Copynumber: 2.1  Consensus size: 16

       1834 TTCTCATAAT

                            
       1844 TTAATTTCCCCCTTAA
          1 TTAATTTCCCCCTTAA

                     *      
       1860 TTAATTT-CTCCTTAA
          1 TTAATTTCCCCCTTAA

              
       1875 TT
          1 TT

       1877 TCGATTTTGT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  15    9  0.56
  16    7  0.44

ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52


Consensus pattern (16 bp):   
TTAATTTCCCCCTTAA
Done.