Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001706.1 Corchorus capsularis cultivar CVL-1 contig01706, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4343
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36


Found at i:6 original size:1 final size:1

Alignment explanation


    Indices: 1--31  Score: 62
    Period size: 1  Copynumber: 31.0  Consensus size: 1

                                           
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

         32 CATAAATATA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   30  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Done.