Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001712.1 Corchorus capsularis cultivar CVL-1 contig01712, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 623

Length: 1039
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:324 original size:27 final size:27

Alignment explanation


    Indices: 293--346  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        283 TTTGTATTTA

                                       
        293 AATTATTGGTAACTTTCTTTTTTATAT
          1 AATTATTGGTAACTTTCTTTTTTATAT

                                       
        320 AATTATTGGTAACTTTCTTTTTTATAT
          1 AATTATTGGTAACTTTCTTTTTTATAT

        347 CTCGATTCAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.26, C:0.07, G:0.07, T:0.59


Consensus pattern (27 bp):   
AATTATTGGTAACTTTCTTTTTTATAT

Found at i:595 original size:20 final size:21

Alignment explanation


    Indices: 570--609  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        560 TTGAATTGTT

                                 
        570 TTTTTCTA-TAAATTGGTAAG
          1 TTTTTCTATTAAATTGGTAAG

                  *   *         
        590 TTTTTCNATTTAATTGGTAA
          1 TTTTTCTATTAAATTGGTAA

        610 ATTGGTCAAG


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  20    7  0.41
  21   10  0.59

ACGTcount: A:0.28, C:0.05, G:0.12, T:0.53


Consensus pattern (21 bp):   
TTTTTCTATTAAATTGGTAAG

Found at i:984 original size:19 final size:19

Alignment explanation


    Indices: 960--997  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        950 ATCAAGTCCC

                               
        960 TTTTTTATGTTGTGATGGA
          1 TTTTTTATGTTGTGATGGA

                               
        979 TTTTTTATGTTGTGATGGA
          1 TTTTTTATGTTGTGATGGA

        998 ATTCTTTTGT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.16, C:0.00, G:0.26, T:0.58


Consensus pattern (19 bp):   
TTTTTTATGTTGTGATGGA
Done.