Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001729.1 Corchorus capsularis cultivar CVL-1 contig01729, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3802
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.35


Found at i:797 original size:20 final size:21

Alignment explanation


    Indices: 769--808  Score: 64
    Period size: 20  Copynumber: 2.0  Consensus size: 21

        759 AATATACATA

                        *        
        769 TACATAAAAATAGTAATATTG
          1 TACATAAAAATAATAATATTG

                                
        790 TACA-AAAAATAATAATATT
          1 TACATAAAAATAATAATATT

        809 AAAATATAAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  20   14  0.78
  21    4  0.22

ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33


Consensus pattern (21 bp):   
TACATAAAAATAATAATATTG

Found at i:2439 original size:6 final size:6

Alignment explanation


    Indices: 2428--2457  Score: 60
    Period size: 6  Copynumber: 5.0  Consensus size: 6

       2418 CCCTTCTCTT

                                              
       2428 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA
          1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA

       2458 TAAAGTTTAC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00


Consensus pattern (6 bp):   
GAAAAA

Done.