Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001731.1 Corchorus capsularis cultivar CVL-1 contig01731, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2517
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38


Found at i:1245 original size:60 final size:60

Alignment explanation


    Indices: 1152--1264  Score: 208
    Period size: 60  Copynumber: 1.9  Consensus size: 60

       1142 AAAATGCTTT

                                               *                        
       1152 CTAAATTTGGTCGTTTCGATTGTTGGTCTATTTAATACCATATAATTTTCGATCCACTTC
          1 CTAAATTTGGTCGTTTCGATTGTTGGTCTATTTAACACCATATAATTTTCGATCCACTTC

                             *                                   
       1212 CTAAATTTGGTCGTTTCTATTGTTGGTCTATTTAACACCATATAATTTTCGAT
          1 CTAAATTTGGTCGTTTCGATTGTTGGTCTATTTAACACCATATAATTTTCGAT

       1265 TCACATGTCC


Statistics
Matches: 51,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  60   51  1.00

ACGTcount: A:0.24, C:0.17, G:0.13, T:0.46


Consensus pattern (60 bp):   
CTAAATTTGGTCGTTTCGATTGTTGGTCTATTTAACACCATATAATTTTCGATCCACTTC
Done.