Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001735.1 Corchorus capsularis cultivar CVL-1 contig01735, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1168
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.22


Found at i:1103 original size:31 final size:31

Alignment explanation


    Indices: 1068--1127  Score: 111
    Period size: 31  Copynumber: 1.9  Consensus size: 31

       1058 CATCTATTTT

                                           
       1068 CATTGTTCAACTCTTTGACAACACGAAAACC
          1 CATTGTTCAACTCTTTGACAACACGAAAACC

                                   *     
       1099 CATTGTTCAACTCTTTGACAACATGAAAA
          1 CATTGTTCAACTCTTTGACAACACGAAAA

       1128 AACCAAAAGC


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   28  1.00

ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28


Consensus pattern (31 bp):   
CATTGTTCAACTCTTTGACAACACGAAAACC
Done.