Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000174.1 Corchorus capsularis cultivar CVL-1 contig00174, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1719
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.35


Found at i:284 original size:33 final size:34

Alignment explanation


    Indices: 224--289  Score: 107
    Period size: 33  Copynumber: 2.0  Consensus size: 34

        214 TAATTTAGAA

                                  *           
        224 ATATATATGAAAATAAAGGGAATAATC-GAAAAT
          1 ATATATATGAAAATAAAGGGAACAATCGGAAAAT

                                *            
        257 ATATATATGAAAATAAAGGGTACAATCGGAAAA
          1 ATATATATGAAAATAAAGGGAACAATCGGAAAA

        290 CAAAAAGTTT


Statistics
Matches: 30,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
  33   25  0.83
  34    5  0.17

ACGTcount: A:0.56, C:0.05, G:0.17, T:0.23


Consensus pattern (34 bp):   
ATATATATGAAAATAAAGGGAACAATCGGAAAAT
Done.