Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001748.1 Corchorus capsularis cultivar CVL-1 contig01748, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 925

Length: 1543
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.36


Found at i:402 original size:18 final size:18

Alignment explanation


    Indices: 379--416  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        369 GAAAGAATAA

                              
        379 GTCTTATTATTGATACAT
          1 GTCTTATTATTGATACAT

                              
        397 GTCTTATTATTGATACAT
          1 GTCTTATTATTGATACAT

              
        415 GT
          1 GT

        417 TAGTAACATT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.26, C:0.11, G:0.13, T:0.50


Consensus pattern (18 bp):   
GTCTTATTATTGATACAT

Found at i:504 original size:16 final size:16

Alignment explanation


    Indices: 483--514  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

        473 ACGGTTCTGG

                            
        483 ATTTTACTAGAAATCA
          1 ATTTTACTAGAAATCA

                            
        499 ATTTTACTAGAAATCA
          1 ATTTTACTAGAAATCA

        515 TATAAGAGCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38


Consensus pattern (16 bp):   
ATTTTACTAGAAATCA
Done.